Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4373 201 1e-46 seq5303 104 2e-17 >seq4373 Length=18302 Score = 201 bits (222), Expect = 1e-46 Identities = 595/916 (65%), Gaps = 55/916 (6%) Strand=Plus/Minus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 ||||||||||| |||||| || ||||| || ||||| ||||| | ||||||| || Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 11401 CATAAAGCTAAAAGGATTAT-------ATACATTGAAG---------------------- 11431 ||||||| ||||||||| | |||||| || Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 11432 -----ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 || |||||| |||| | || || || || ||||||| ||||| || |||| Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 11487 GAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || |||| | |||||||| || || ||| | || || | ||| ||| |||||| Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTG-ACTGGTAGAGCTTCTGATAAAAAC 10689 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605 |||| |||||| ||| || || | ||||| ||| | | ||| || || || Sbjct 10688 TCCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTTT 10629 Query 11606 TGTAATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 | | |||| ||||||||| | || ||| || ||||||||||| | |||||||||||||| Sbjct 10628 T-TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACT 10570 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 |||| |||||| ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 10569 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 10510 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 ||| || || ||||||||| || | || ||||| |||||||| || | || | ||| Sbjct 10509 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 10450 Query 11785 TCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 | || || | | | || | ||||| | | ||||| | ||| || ||| | Sbjct 10449 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 11841 CGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || || ||| | ||| ||||| || | | ||||| | ||| | | Sbjct 10390 CACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 10333 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||||| ||||||||| |||||||| || |||||||| || |||||||| || | Sbjct 10332 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCAT 10273 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||| || || || |||||| ||| || ||| || | ||| | || Sbjct 10272 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTT 10213 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||| |||||| || ||||| | ||||| || |||| | | ||| || | Sbjct 10212 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 10153 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134 ||| ||| || | ||||||| | |||||| || ||||| || |||| Sbjct 10152 TTCCCCAACCTTGAGCGA----CTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 10097 Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194 | || ||||||||| || || | | ||||| | | ||||| ||| ||||| | | Sbjct 10096 CCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTA 10037 Query 12195 TAGGGAAAATAACGAA 12210 | ||||||| ||||| Sbjct 10036 TGGGGAAAAGGACGAA 10021 >seq5303 Length=16207 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| ||| ||||| | || |||| ||| ||||| || | || || Sbjct 6915 TCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCC 6974 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 6975 TTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGT 7034 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 ||| |||||||| | ||| || || |||||| | ||||||||||| |||| Sbjct 7035 TCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 7084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468172586481600