Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4373 232 9e-56 seq5303 105 9e-18 >seq4373 Length=18302 Score = 232 bits (256), Expect = 9e-56 Identities = 508/751 (68%), Gaps = 15/751 (2%) Strand=Plus/Minus Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049 || ||||||| |||||| || || ||||| || ||||||||||| || | | Sbjct 10772 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10713 Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 36108 ||||| ||||| | | | ||| || ||||| || ||| || || ||| |||| || || Sbjct 10712 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGA 10654 Query 36109 TATTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 36165 || ||||| ||| || | |||| ||||||||| | | ||| ||||| Sbjct 10653 CTCAACACGTTCTT---TCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAA 10597 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||| || || || || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 10596 ATCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 10537 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || || || || |||||||| ||||| | || || |||||||| |||| ||||| Sbjct 10536 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTC 10477 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTT 36342 ||||| ||||| ||||| | | ||| || || | || || | ||||| | Sbjct 10476 CACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATC 10417 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGA 36400 | ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 10416 TAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGA 10359 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 ||| |||| || ||||| | ||||||||||| || | | |||||||| || Sbjct 10358 AAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 10299 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 ||||| || ||||| || || || | ||| || || || | | |||| | ||||| ||| Sbjct 10298 TGAATATTCTCAATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACT 10239 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 || | || |||||| | || || || ||||||||||| || ||||| || Sbjct 10238 TCCTGGCTGAAGCGTTCTAAGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAA 10179 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || || || | ||| |||| ||| | || | ||||| ||| | Sbjct 10178 GCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGA 10119 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 ||||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | | Sbjct 10118 TCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAA 10059 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | ||||| || ||||||| || || |||| Sbjct 10058 TGCCAGACATCGTGATATTCTATGGGGAAAA 10028 >seq5303 Length=16207 Score = 105 bits (116), Expect = 9e-18 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || ||||| Sbjct 6916 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCT 6975 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 66456 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 6976 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 7033 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 7034 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 7093 Query 66517 ACGTCT 66522 |||||| Sbjct 7094 ACGTCT 7099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657678018597600