Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2601 100 3e-16 seq4373 89.7 5e-13 >seq2601 Length=24241 Score = 100 bits (110), Expect = 3e-16 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||||| || ||||| || || || || | || | ||||| | ||| ||||||||| | Sbjct 23757 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCAAA 23815 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 |||| |||||| || || ||||| || ||||||||||| ||| | || | || | | Sbjct 23816 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC-TTGAATCTTCGCCTTCACAT 23874 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | || || | ||||| ||||| | || | |||||| || |||||||| |||| Sbjct 23875 TCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTA 23934 Query 139752 CGAATATTTGCAT 139764 ||||||||||||| Sbjct 23935 CGAATATTTGCAT 23947 >seq4373 Length=18302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | | |||| | |||||||| |||||| Sbjct 10396 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGT 10455 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | | || ||||| |||||||||||| |||||||| ||||| || || || ||||| Sbjct 10456 TTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTC 10515 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 10516 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 10574 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 10575 AGACGAAGGACTTCATTGTGATTTCGCTTGT 10605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495691083888000