Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4373 230 3e-55 seq5303 105 1e-17 >seq4373 Length=18302 Score = 230 bits (254), Expect = 3e-55 Identities = 607/927 (65%), Gaps = 45/927 (5%) Strand=Plus/Minus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 49780 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 49781 CAGAAA-----------------TCAAT-------CTATCCGCGACAAATTCTATATATG 49816 | ||| |||| || || |||| |||||| || || Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 49876 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 49877 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT 49936 | ||||| || || || ||| |||| || || ||| ||||| ||| || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGCT 10631 Query 49937 GCA--ATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 49993 |||| ||||||||| | | ||| |||||||| || || || || |||||||||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 49994 TAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 50053 | |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 50054 TGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCT 50113 | | || || |||||||| || | ||||| ||||| ||||| |||| | | | Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 50114 CTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 50170 || || || | | || || | ||||| | | ||||| | ||||| ||| | Sbjct 10450 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 50171 CACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 50229 |||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 10390 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332 Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || || | | |||||||| || ||||| || ||||| || ||||| | | Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || || || || | | |||| | ||||| ||||| | || ||||| | || Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 || || ||||||||||| || ||||| || || || || | ||| ||||| | Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 10152 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 || | || | ||||| ||| |||||| || | ||| || |||||||| Sbjct 10151 TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACA 10092 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 50529 |||||||| || || | ||||| ||||| | || ||||| || ||||||| || ||| Sbjct 10091 GTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGG 10032 Query 50530 AAAATAACAAATCTATTTGGATTTGGT 50556 |||| || || | | ||| |||||| Sbjct 10031 AAAAGGACGAAACGGTGTGGGTTTGGT 10005 >seq5303 Length=16207 Score = 105 bits (116), Expect = 1e-17 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || ||||| Sbjct 6916 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCT 6975 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 80335 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 6976 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 7033 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 7034 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 7093 Query 80396 ACGTCT 80401 |||||| Sbjct 7094 ACGTCT 7099 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 80623 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 80682 |||||||| ||| || |||||||| || ||| ||||| || || || || | Sbjct 8297 GGAGAATGCTTCTTGGTTCGAGGATTAATGTAACCGAACAAATCTTCAATAACATCTGAA 8356 Query 80683 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 || ||| ||| |||||||||||||||||||| ||||| | | || || ||||| | Sbjct 8357 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATAG 8414 Query 80741 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||| || |||||| ||| | || | | || | | |||||||||||| | ||||| Sbjct 8415 CATATTCATGATGTTTTGTTAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAC 8473 Query 80800 TCTACCGTTGTTACTCCATTATATA 80824 || || || || ||||| ||||| Sbjct 8474 TCCACAGTAGTCACTCCCGGATATA 8498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717728841429600