Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4373 210 2e-49 >seq4373 Length=18302 Score = 210 bits (232), Expect = 2e-49 Identities = 452/673 (67%), Gaps = 46/673 (7%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 13643 CATAAAATCAAATGGATTT----ATTGACA----TAAAC--------------------- 13673 |||||| ||||| ||||| | ||| | ||||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 13674 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728 || || ||| |||| ||||| | ||||| || || || ||||| ||||| || | Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 13789 CTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGA 13847 | | |||||| ||| || |||||| |||| || || | || || ||||| Sbjct 10687 CCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTTT 10629 Query 13848 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 | | | ||||||||| | || ||| || |||||||||||||| || || |||||||| Sbjct 10628 TTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACTG 10569 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 10568 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 10509 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || || || || ||||| || | || || ||||| ||||| || ||||| |||||| Sbjct 10508 GCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 10449 Query 14028 CCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086 |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 10448 GCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 10390 Query 14087 AAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAA 14142 | || | ||| || || || || || | | | ||| | ||||| ||| ||| | Sbjct 10389 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG--A 10334 Query 14143 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14202 ||||||||||||| | ||| |||||||||||||| || || || ||||||||||| | Sbjct 10333 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCA 10274 Query 14203 AACCATAAAAGCA 14215 ||||||||||| Sbjct 10273 TTCCATAAAAGCA 10261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479367364476000