Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq4373 219 4e-52
>seq4373
Length=18302
Score = 219 bits (242), Expect = 4e-52
Identities = 574/872 (66%), Gaps = 48/872 (6%)
Strand=Plus/Minus
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||||||||| ||||| || ||||||||||| || || ||||| | |||||||||||
Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868
Query 13431 CATAAAATCGAATGGATTTGT-----TGACA----TAAAC-------------------- 13461
|||||| || || ||||| || ||| | |||||
Sbjct 10867 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAAT 10809
Query 13462 ------ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515
|| || ||| |||| ||||| | || || || || || ||||| ||||| ||
Sbjct 10808 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 10749
Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575
||| |||| | | |||||||| || |||| | || || | | | ||||||
Sbjct 10748 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 10689
Query 13576 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGG 13634
|| | |||||| ||| || ||||| |||| || || || | || || |||||
Sbjct 10688 TCCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTT 10630
Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694
| | | ||||||||| | || ||| || |||||||||||||| || || ||||||||
Sbjct 10629 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACT 10570
Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754
|| | ||| || ||| | | ||| ||||| | |||||||| || | ||| |||||
Sbjct 10569 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 10510
Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814
|| ||||| || ||||| || | || || ||||| ||||| || |||| |||||
Sbjct 10509 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 10450
Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874
| |||| | | ||| | | ||||| | | ||||| | || |||||| ||
Sbjct 10449 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 10390
Query 13875 AAAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAA 13929
| || | ||| || || || ||||| | || || |||| ||||| ||| |||
Sbjct 10389 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG-- 10335
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
|||||||||||||| | ||| |||||||||||||| || || || |||||||||||
Sbjct 10334 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGC 10275
Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049
| |||||||| || | | | |||| || || ||| | || | |||| | |
Sbjct 10274 ATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGG 10215
Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109
|| || ||||| || ||||| || ||||| || || || | || || || |
Sbjct 10214 TTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGA 10155
Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169
| || || ||||| | ||||| | ||| || || | ||| || || ||
Sbjct 10154 CGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 10095
Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201
|| ||||||||| ||| ||||| || |||||
Sbjct 10094 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 10063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478229020869600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |