Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2618 93.3 3e-14 seq2601 84.2 2e-11 >seq2618 Length=24172 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||| || ||||| | || ||| | || |||| ||||||||| |||||| Sbjct 20909 TCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAA 20850 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || ||||| || | || | |||||||| || || | | || ||| Sbjct 20849 ATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCT 20790 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||| || ||| ||| || |||| |||||||||||||| || || || ||||| Sbjct 20789 TCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACG 20730 Query 43099 AAAATTTGCAT 43109 ||||| ||||| Sbjct 20729 AAAATCTGCAT 20719 >seq2601 Length=24241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| || |||| |||||| | || ||||| || || || ||||| ||||| || ||| Sbjct 23769 TTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCAAATATCAAACGTTGT 23828 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | ||||||||| || ||| | | || || | ||| || || Sbjct 23829 TGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATAGTATCA 23888 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || ||| || || | ||| || || ||||| || | || || || || ||||||||| Sbjct 23889 CTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTACGAATATTTGCATT 23948 Query 43111 TTCTTAATTTT 43121 ||| ||| || Sbjct 23949 TTCCAAATATT 23959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381090072768120