Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4373 246 4e-60 seq5303 109 7e-19 >seq4373 Length=18302 Score = 246 bits (272), Expect = 4e-60 Identities = 615/929 (66%), Gaps = 49/929 (5%) Strand=Plus/Minus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| |||||||| || || || || ||||| || ||||||||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 41885 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 41886 CAGAAA-----------------TCAAT-------CTATCTGCGATGAATTCTATATATG 41921 | ||| |||| || |||||||| ||||| || || Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 41982 CTTGTTC-AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 42039 | ||||| | |||| || || ||| |||| || || || ||||| ||| || Sbjct 10687 CCTGTTCTATTAGA-ACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGC 10632 Query 42040 -ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTA 42097 | |||| ||||||||| | | ||| |||||||| || || || || || |||||| Sbjct 10631 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTA 10572 Query 42098 CTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 42157 || |||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||| Sbjct 10571 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 10512 Query 42158 ATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 |||| || || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 10511 ATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 10452 Query 42218 TCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 ||| || || | || || | ||||| | | ||||| | ||||| ||| Sbjct 10451 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 10392 Query 42275 ACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 42333 ||||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 10391 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 10333 Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 |||||||| || || | | |||||||| || ||||| || ||||| || ||||| | Sbjct 10332 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCAT 10273 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT 42453 ||| || || || | |||| | | ||| ||||| | || ||||| | || Sbjct 10272 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTT 10213 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 ||| || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 10212 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 10153 Query 42514 TTCGTCCGGTGTTAATTTA-TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTA 42572 ||| || || | | | ||||| ||| |||||| || | ||| || ||||| | Sbjct 10152 TTC-CCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 10094 Query 42573 CCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTG 42632 | |||||||| || ||| | ||||| ||||| | || ||||| ||| ||||||| || | Sbjct 10093 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 10034 Query 42633 GGAAAATAACAAATCTATTTGGATTTGGT 42661 |||||| || || | | ||| |||||| Sbjct 10033 GGAAAAGGACGAAACGGTGTGGGTTTGGT 10005 >seq5303 Length=16207 Score = 109 bits (120), Expect = 7e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || ||||| Sbjct 6916 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCT 6975 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 72418 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 6976 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 7033 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 7034 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 7093 Query 72479 ACGTCT 72484 |||||| Sbjct 7094 ACGTCT 7099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670634671106400