Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2601 89.7 5e-13 seq2618 87.8 2e-12 >seq2601 Length=24241 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCAT 143051 |||||| || |||||||| || || || | || | ||||| | || ||||||||| Sbjct 23756 TTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCAA 23814 Query 143052 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCT 143111 | |||| |||||| || || ||||| || ||||||||||| ||| || || | | Sbjct 23815 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTCGCCTTCACAT 23874 Query 143112 GTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTA 143171 || | || || | || || || || | || | |||||| || ||||| || |||| Sbjct 23875 TCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTA 23934 Query 143172 CGAATATTTGCAT 143184 ||||||||||||| Sbjct 23935 CGAATATTTGCAT 23947 >seq2618 Length=24172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||| ||||| || ||||| || || ||| Sbjct 20945 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 20886 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| |||||||| |||||| | || |||||||| || || || || Sbjct 20885 AGAGTTCGTCCA-TCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGG 20827 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTA 143135 ||||||||||| || | | |||| | ||| ||| ||| | || || | || || | Sbjct 20826 GATGCCTTCTTTATC-TTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 20768 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || || || || | ||| || ||||| || ||||| Sbjct 20767 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 20719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506633251924800