Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2601 113 3e-20 seq2618 102 6e-17 >seq2601 Length=24241 Score = 113 bits (124), Expect = 3e-20 Identities = 147/202 (73%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 ||||| || |||||||| || ||| | | | ||||| || || || ||||| || Sbjct 23757 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCAAAT 23816 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||||||||| ||||| ||||||||||| ||| || ||| ||| | Sbjct 23817 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTCGCCTTCACATTC 23876 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || ||||| ||| || || || || ||||| || || ||||||| || ||||| Sbjct 23877 TCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTACG 23936 Query 15353 AAAATTTGCATATTTGAAAATA 15374 || |||||||| ||| ||||| Sbjct 23937 AATATTTGCAT-TTTCCAAATA 23957 >seq2618 Length=24172 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || ||||| || || ||| ||| ||| | ||||| | ||| Sbjct 20922 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 20863 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || | |||||||||||| ||| || |||||||| || |||||| Sbjct 20862 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 20803 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||||| ||||| | || || |||| ||| || ||||| || || Sbjct 20802 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 20743 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 20742 AAGTGTCTTCACGAAAATCTGCAT 20719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361913738491740