Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq4373 269 2e-67
>seq4373
Length=18302
Score = 269 bits (298), Expect = 2e-67
Identities = 605/905 (67%), Gaps = 48/905 (5%)
Strand=Plus/Minus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
||||||||| | ||||| || |||||||||||||| |||||||| | ||| ||||||||
Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868
Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956
|||||| || |||||||| | ||| ||| |||
Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808
Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007
| || | | || | ||| | || | ||||| || | ||| || |||||||
Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748
Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067
| ||| | | || |||||||| ||||| | || || | |||||||| |||||| |
Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688
Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT 13127
| |||||| |||||| || | | ||| | || | ||||||| | | ||| |
Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTAT-TGACTCAACACGTTCTTTC--GAAGGCT 10631
Query 13128 TT--GATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTAC 13184
|| |||| ||| ||||| | | ||| || |||||||| || | |||||| |||||||
Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571
Query 13185 TTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATA 13244
| |||| || || ||| | || || |||||||| |||||||| |||| ||| ||||
Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511
Query 13245 TAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTT 13304
|||| || || ||| |||||||| | ||||| ||||||||||| || || || | ||
Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451
Query 13305 CACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTA 13363
| || | ||| |||| | ||| | ||||| | | ||||| | || |||| | |
Sbjct 10450 CTGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 10392
Query 13364 ACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATA 13423
|| || | | || ||| ||||| || | | | | |||| || |||| ||
Sbjct 10391 ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332
Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483
|| ||||| || ||||| |||||||| || |||||||| || || ||||| || |
Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272
Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543
|||||||| || | | |||||| | ||| ||||| | || | |||| | |||
Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212
Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAtttttt 13602
||| || || |||||||| || ||||| ||||| | | || | || |||| |
Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 10152
Query 13603 ttCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660
| | | ||| | ||| ||||| | | |||||| || ||||| ||||| ||
Sbjct 10151 TCCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 10095
Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720
|| |||||||||||||| |||||||||||||| | ||| | ||| | ||| | |||
Sbjct 10094 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATG 10035
Query 13721 GGAAA 13725
|| ||
Sbjct 10034 GGGAA 10030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430666508756280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |