Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4373 269 2e-67 >seq4373 Length=18302 Score = 269 bits (298), Expect = 2e-67 Identities = 605/905 (67%), Gaps = 48/905 (5%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||||| || |||||||||||||| |||||||| | ||| |||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956 |||||| || |||||||| | ||| ||| ||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007 | || | | || | ||| | || | ||||| || | ||| || ||||||| Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067 | ||| | | || |||||||| ||||| | || || | |||||||| |||||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT 13127 | |||||| |||||| || | | ||| | || | ||||||| | | ||| | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTAT-TGACTCAACACGTTCTTTC--GAAGGCT 10631 Query 13128 TT--GATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTAC 13184 || |||| ||| ||||| | | ||| || |||||||| || | |||||| ||||||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 13185 TTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATA 13244 | |||| || || ||| | || || |||||||| |||||||| |||| ||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 13245 TAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTT 13304 |||| || || ||| |||||||| | ||||| ||||||||||| || || || | || Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 13305 CACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTA 13363 | || | ||| |||| | ||| | ||||| | | ||||| | || |||| | | Sbjct 10450 CTGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 10392 Query 13364 ACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATA 13423 || || | | || ||| ||||| || | | | | |||| || |||| || Sbjct 10391 ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332 Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || ||||| || ||||| |||||||| || |||||||| || || ||||| || | Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543 |||||||| || | | |||||| | ||| ||||| | || | |||| | ||| Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAtttttt 13602 ||| || || |||||||| || ||||| ||||| | | || | || |||| | Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 10152 Query 13603 ttCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 | | | ||| | ||| ||||| | | |||||| || ||||| ||||| || Sbjct 10151 TCCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 10095 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720 || |||||||||||||| |||||||||||||| | ||| | ||| | ||| | ||| Sbjct 10094 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATG 10035 Query 13721 GGAAA 13725 || || Sbjct 10034 GGGAA 10030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430666508756280