Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1461 95.1 1e-14 seq2514 93.3 5e-14 seq42 82.4 9e-11 >seq1461 Length=31408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/243 (70%), Gaps = 14/243 (6%) Strand=Plus/Minus Query 164536 GGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAA--GCTTTTAAAT 164593 || || |||||| ||||||||| ||||||| ||| |||| | || |||| ||| Sbjct 10796 GGTCCACCTGGTACTGGTAAAACACTAATGGCACGACAAATTGGTAAAATGCTT---AAT 10740 Query 164594 ---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGT 164650 || || || ||||||||| |||||||| |||| | |||||||| ||||| | Sbjct 10739 GCACGTGAACC--TAAAATTGTCAATGGTCCAAGTATATTAGATAAATATGTCGGTGAAT 10682 Query 164651 CAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCA--GG 164708 | ||||| ||| | | || ||||| || |||||||||||| ||| || ||| || Sbjct 10681 CTGAAGCGAATATCCGTAAATTGTTCGCTGATGCTGAAGAAGAAGAAA--AACGCATGGG 10624 Query 164709 TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG 164768 | | | ||| ||| ||||| | |||||||| || ||||| |||| ||| ||| Sbjct 10623 TGCAAAATCTGCATTGCATATTATTATATTTGATGAAATTGATGCCATTTGTAAATCACG 10564 Query 164769 TGG 164771 ||| Sbjct 10563 TGG 10561 >seq2514 Length=24644 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Plus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||||||| | | ||||||||| || || |||| ||| ||||||| Sbjct 2833 TCACCTTCTTCACGCTCAGTAAATCCTAGTCCATCTAAAA---ATTCACGAGATCCATTT 2889 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||| | ||||||| || |||| | || | ||||||||||||||| || Sbjct 2890 GCATCCCAGAAATGTACA--TTCTTTTCCGCCAGTTCACGAGAATTTGTAGATCCACGAA 2947 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| ||||||||||| ||||| || |||||| Sbjct 2948 CAAACCATAATAGTTCTTCTACGATTCCGCGAAAAAACA 2986 >seq42 Length=84351 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 || ||||| || ||||| || ||||||||||||||||||||| || || || || Sbjct 6772 CAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 6831 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||| ||| |||| ||||| ||||| Sbjct 6832 ATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGAC 6881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595424053224000