Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25]
60,140 sequences; 344,202,215 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq1461 95.1 1e-14
seq2514 93.3 5e-14
seq42 82.4 9e-11
>seq1461
Length=31408
Score = 95.1 bits (104), Expect = 1e-14
Identities = 170/243 (70%), Gaps = 14/243 (6%)
Strand=Plus/Minus
Query 164536 GGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAA--GCTTTTAAAT 164593
|| || |||||| ||||||||| ||||||| ||| |||| | || |||| |||
Sbjct 10796 GGTCCACCTGGTACTGGTAAAACACTAATGGCACGACAAATTGGTAAAATGCTT---AAT 10740
Query 164594 ---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGT 164650
|| || || ||||||||| |||||||| |||| | |||||||| ||||| |
Sbjct 10739 GCACGTGAACC--TAAAATTGTCAATGGTCCAAGTATATTAGATAAATATGTCGGTGAAT 10682
Query 164651 CAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCA--GG 164708
| ||||| ||| | | || ||||| || |||||||||||| ||| || ||| ||
Sbjct 10681 CTGAAGCGAATATCCGTAAATTGTTCGCTGATGCTGAAGAAGAAGAAA--AACGCATGGG 10624
Query 164709 TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG 164768
| | | ||| ||| ||||| | |||||||| || ||||| |||| ||| |||
Sbjct 10623 TGCAAAATCTGCATTGCATATTATTATATTTGATGAAATTGATGCCATTTGTAAATCACG 10564
Query 164769 TGG 164771
|||
Sbjct 10563 TGG 10561
>seq2514
Length=24644
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/159 (74%), Gaps = 10/159 (6%)
Strand=Plus/Plus
Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281
|||||||||||||| | | ||||||||| || || |||| ||| |||||||
Sbjct 2833 TCACCTTCTTCACGCTCAGTAAATCCTAGTCCATCTAAAA---ATTCACGAGATCCATTT 2889
Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339
|||||||| | ||||||| || |||| | || | ||||||||||||||| ||
Sbjct 2890 GCATCCCAGAAATGTACA--TTCTTTTCCGCCAGTTCACGAGAATTTGTAGATCCACGAA 2947
Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378
|||||||| ||||||||||| ||||| || ||||||
Sbjct 2948 CAAACCATAATAGTTCTTCTACGATTCCGCGAAAAAACA 2986
>seq42
Length=84351
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453
|| ||||| || ||||| || ||||||||||||||||||||| || || || ||
Sbjct 6772 CAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 6831
Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
|| || ||| |||||||||| ||||| ||| |||| ||||| |||||
Sbjct 6832 ATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGAC 6881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595424053224000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |