Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq49055 172 9e-39 seq6817 172 9e-39 seq11772 147 3e-31 >seq49055 Length=760 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 419 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 477 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || || || | || |||||| |||| || |||| Sbjct 478 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 537 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 538 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 597 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 598 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 657 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 658 TCGTACTTTGTACGGTTTCGGTGGTTAAT 686 >seq6817 Length=13622 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 5472 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 5414 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || || || | || |||||| |||| || |||| Sbjct 5413 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 5354 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 5353 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 5294 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 5293 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 5234 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 5233 TCGTACTTTGTACGGTTTCGGTGGTTAAT 5205 >seq11772 Length=8525 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 7797 CTGCGTGATAACATCCAAGGTATTACGAAACCTGCTATTCGTCGCCTTGCTCGCCGTGGA 7738 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | ||||| ||| |||| || || | ||||| ||| ||||| | || Sbjct 7737 GGTGTAAAACGCATTTCTGGTTTGATCTACGAGGAAACTCGTGGTGTGTTGAAAGTATTT 7678 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||| | ||| ||| || || || ||||| || || || ||||| || Sbjct 7677 CTGGAAAATGTTATTCGTGACGCTGTCACATACACGGAGCATGCCAAGCGGAAGACAGTA 7618 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || ||||| |||||||| || || |||| | || |||||||| Sbjct 7617 ACCGCCATGGACGTAGTATATGCTTTGAAACGCCAGGGTCGTACATTGTACGGTTTTGGT 7558 Query 16694 AGTTAA 16699 ||||| Sbjct 7557 GGTTAA 7552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020213577020