Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4373 138 1e-27 >seq4373 Length=18302 Score = 138 bits (152), Expect = 1e-27 Identities = 572/907 (63%), Gaps = 52/907 (6%) Strand=Plus/Minus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || ||||| |||||||||||||| | |||||| ||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTA----------------------T 21284 |||||| ||||| ||||| ||||| | | | || | | | Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 21285 TACAACCC------------AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332 ||||| || ||||| || || || ||||| | |||||| || || | Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| | || |||||||| || || || | || || ||||||| || ||||| Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 21393 ATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACT----AGG 21447 | |||||| ||| || || || ||||| | | | | | || || | | Sbjct 10687 CCTGTTCTATTAGA-ACTGCCTCTCTTATTAT-----TGACTCAACACGTTCTTTCGAAG 10634 Query 21448 GGGATACAATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506 | | ||||| |||||||| | | ||| || ||||||||||| | ||||| || | Sbjct 10633 GCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTC 10574 Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAA 21566 |||| ||||||||||| ||| | | || ||||| | |||| || || | ||| | Sbjct 10573 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 10514 Query 21567 ATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT 21625 |||| | || || ||| || ||||| |||| || || || || ||||| |||| ||| Sbjct 10513 ATATAGCTGCGAA-GCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAA 10455 Query 21626 CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCT 21685 ||||| | | ||||||| ||| ||||| | | |||||| | ||||||| | Sbjct 10454 CGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTT 10395 Query 21686 TTAATACAA--TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGG 21743 || |||| | | ||| | || || || || ||| | |||| | || Sbjct 10394 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTT 10337 Query 21744 TTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCT 21803 | ||| | ||||||||||| || ||||| || || ||||||| Sbjct 10336 TGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCT 10277 Query 21804 GAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCA 21863 | | ||| ||||| || | |||||| || || || || |||| | Sbjct 10276 GCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGA 10217 Query 21864 AGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAAT 21923 ||| || ||| ||||| ||||| || ||||| || || || | | ||| |||| Sbjct 10216 GGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAAT 10157 Query 21924 ATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTT 21983 ||||| | | | | | ||||| || | |||||| || ||||| || |||| Sbjct 10156 GACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 10097 Query 21984 CAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTA 22043 | |||||||| ||| | |||||| ||||| | | ||||| ||| | |||| || Sbjct 10096 CCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTA 10037 Query 22044 TTGGAAA 22050 | || || Sbjct 10036 TGGGGAA 10030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531500943573600