Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4373 223 4e-53 seq5303 100 4e-16 >seq4373 Length=18302 Score = 223 bits (246), Expect = 4e-53 Identities = 614/941 (65%), Gaps = 45/941 (5%) Strand=Plus/Minus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 33124 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 33125 CAGAAA-----------------TCAAT-------CTATCCGCGACGAATTCTATATATG 33160 | ||| |||| || || |||| ||||| || || Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT 33280 | ||||| || || || ||| |||| || || ||| ||||| ||| || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGCT 10631 Query 33281 GCA--ATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 33337 |||| ||||||||| | | ||| |||||||| || || || || |||||||||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 33338 TAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33397 | |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 33398 TGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT 33457 | | ||||| |||||||| || | ||||| ||||| ||||| ||||| | | | Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 33458 CTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33514 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 10450 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 33515 CACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 33573 |||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 10390 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 10332 Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| || || | | |||||||| || ||||| || ||||| || ||||| | | Sbjct 10331 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATT 10272 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || || || || | | |||| | ||||| ||||| | || ||||| | || Sbjct 10271 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTC 10212 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 || || ||||||||||| || ||||| || || || || | ||| |||| | Sbjct 10211 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 10152 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 || | | || | ||||| ||| |||||| || | ||| || |||||||| Sbjct 10151 TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACA 10092 Query 33814 GTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGG 33873 |||||||| || || | ||||| ||||| | | ||||| || | ||||| || ||| Sbjct 10091 GTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGG 10032 Query 33874 AAAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 |||| || || | | ||| |||||| || | |||||| Sbjct 10031 AAAAGGACGAAACGGTGTGGGTTTGGTTTCAGTAAGGGTTC 9991 >seq5303 Length=16207 Score = 100 bits (110), Expect = 4e-16 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || || || Sbjct 6916 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCT 6975 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 6976 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 7033 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 7034 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 7093 Query 63673 ACGTCT 63678 |||||| Sbjct 7094 ACGTCT 7099 Score = 82.4 bits (90), Expect = 1e-10 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 63900 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 63959 |||||||| ||| || |||||||| || ||| ||||| || || || || | Sbjct 8297 GGAGAATGCTTCTTGGTTCGAGGATTAATGTAACCGAACAAATCTTCAATAACATCTGAA 8356 Query 63960 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 || ||| ||| |||||||||||||||||||| ||||| | | || || | ||| | Sbjct 8357 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATAG 8414 Query 64018 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||| || |||||| ||| | || | | || | | |||||||||||| | ||||| Sbjct 8415 CATATTCATGATGTTTTGTTAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAC 8473 Query 64077 TCTACCGTTGTTACTCCATTATATA 64101 || || || || ||||| ||||| Sbjct 8474 TCCACAGTAGTCACTCCCGGATATA 8498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622478899442400