Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5303 96.9 9e-15 seq9656 91.5 4e-13 >seq5303 Length=16207 Score = 96.9 bits (106), Expect = 9e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | |||||||||||| ||||| |||||||| || || || Sbjct 5952 CAGATTGAAACAGGCAATCCATTTATGTTGTACAAGGATTCTTGCAACCGTAAATCAAAT 5893 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || || || || ||||||| ||||||||||| ||||| || |||| || | Sbjct 5892 CACCAACATCTAGGCACAATTCGTTGTAGCAACCTATGCACCGAAATAGTTGAGTATTCT 5833 Query 364264 GCTCCCGACGAGACTGCCGTATGTAA 364289 | || ||||| || || || ||||| Sbjct 5832 TCACCAGACGAAACAGCTGTCTGTAA 5807 >seq9656 Length=10280 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| ||||| |||||||||||||| || || | || | | || |||||| Sbjct 290 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCAT 349 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| | | ||||| ||||| ||| ||||| || || ||||||||| |||| || Sbjct 350 ATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTCA 409 Query 111882 AACCA 111886 ||||| Sbjct 410 AACCA 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302349309029480