Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq55192 96.9 7e-15 seq57148 89.7 1e-12 seq197 87.8 4e-12 seq39 84.2 4e-11 >seq55192 Length=623 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 74 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 15 Query 142563 CCCCACATCGGGC 142575 |||||| |||||| Sbjct 14 CCCCACGTCGGGC 2 >seq57148 Length=572 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 142033 CAAGTGGGCATTAAACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATC 142092 ||||||||||| || || ||| | ||||||||||||| ||||||| ||||||||| || Sbjct 68 CAAGTGGGCATAAATCGGC-GTCCCGGTGGCGCAATGGATAGCGCGTCGGACTTCTATTC 126 Query 142093 CAAAGGTTGCGGGTTCGACCCCCGCC 142118 | ||||||||||||||| |||||| Sbjct 127 CGGAGGTTGCGGGTTCGAGTCCCGCC 152 >seq197 Length=61170 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| | |||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 38079 AGCCCGACTGGCTCAGTCGGTAGAGCATGAAACTCTTAATCTCAAGGTCGTGGGTTCGAG 38138 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 38139 CCCCACATCGGGC 38151 >seq39 Length=85182 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| | ||||| ||||| ||| Sbjct 18931 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGGGGGTCG-GGGTTGGAG 18873 Query 142563 CCCCACATCGGGC 142575 ||| |||||||| Sbjct 18872 CCCACCATCGGGC 18860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027044806777740