Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6821 158 5e-33 seq2618 154 6e-32 seq32520 145 3e-29 seq42 91.5 6e-13 seq2601 87.8 7e-12 >seq6821 Length=13617 Score = 158 bits (174), Expect = 5e-33 Identities = 257/367 (70%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || ||||| || || || || || ||||||| | || |||||||| || Sbjct 9665 AAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 9606 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| |||| ||||| |||||||| | ||||| || || ||||| || Sbjct 9605 GAATCCTATCTTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAAC 9546 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 || ||||| || || ||||| |||||||| || ||| ||||||||||| ||| | || || Sbjct 9545 GACGCACAGCGCCAGGCAACCAAAGATGCTGGCACA-ATTGCTGGTTTGAATATACTCCG 9487 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 || ||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 9486 GATCATTAATGAACCAACTGCTGCTGCGATTGCGTACGGTCTAG-------ATAAGAAAG 9434 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | ||||| |||||| | |||||||| |||| || || ||| || ||| ||| Sbjct 9433 ATGGTGAAAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCACTAC 9374 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || ||||||| | || || || |||||| || || |||||||| || ||||| || | Sbjct 9373 TTACAATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTG 9314 Query 451590 GTGAAGA 451596 | || || Sbjct 9313 GAGAGGA 9307 >seq2618 Length=24172 Score = 154 bits (170), Expect = 6e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||| || || |||||||| || || || ||||| | || Sbjct 20719 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 20778 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||||| |||| |||||||||||||| ||||| || || || || ||| Sbjct 20779 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 20838 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || |||||||| ||||||||| ||||| | | || |||||| Sbjct 20839 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 20898 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||||||||| Sbjct 20899 ATACAGAAGGAATCAACACTTCA 20921 >seq32520 Length=1932 Score = 145 bits (160), Expect = 3e-29 Identities = 269/392 (69%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCT--GAAGAAATTTCATCTATGGTTCTTACTA 451274 ||||| ||||| | |||| || | |||| || || ||||| || ||||| | || | Sbjct 818 TATAAGGGTGAGA--AAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGACGA 875 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 ||||||| || || ||| ||| | || |||| | ||| || || || || | Sbjct 876 AAATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACAGTAAGTGACGCGGTTATAACAG 935 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 |||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| |||| Sbjct 936 TTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTG 995 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 || | ||||| | |||| |||||||| |||||||| || || | || ||||| ||| Sbjct 996 GTCTTAATGTGTTGAGAATCATTAATGAGCCTACAGCTGCGGCAATTGCCTATGGTTTAG 1055 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || | | || ||| | || |||||||||| ||||| || || Sbjct 1056 ACAA---GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACAT 1112 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| || | | ||||||| ||||| |||| || || ||| | || ||||| Sbjct 1113 TTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTG 1172 Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||| || | |||||||||||| |||| ||| Sbjct 1173 ATACACACTTGGGAGGTGAAGATTTTGACAAT 1204 >seq42 Length=84351 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||| ||||| ||||| || ||| ||| || | ||| ||||||||| ||||||| Sbjct 6765 ACACGGACAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATG 6824 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||| | ||| |||| ||||||||||| Sbjct 6825 TGAAGGAATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 6884 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 6885 TGGACATTTA 6894 >seq2601 Length=24241 Score = 87.8 bits (96), Expect = 7e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||| || || || ||||| | || ||||| | Sbjct 23948 AATGCAAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 23889 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | || || |||||||| || ||||| ||||||||||| || Sbjct 23888 TGATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCA 23829 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || || | || || || | ||||||||| | ||| || | || || || Sbjct 23828 ACAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 23769 Query 391229 TAT 391231 || Sbjct 23768 CAT 23766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974196022535120