Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq32520 302 3e-76 seq6821 172 4e-37 seq9990 86.0 5e-11 >seq32520 Length=1932 Score = 302 bits (334), Expect = 3e-76 Identities = 882/1340 (66%), Gaps = 30/1340 (2%) Strand=Plus/Minus Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 517447 || ||||||||||| | |||||| || ||| || || || || || ||||| || Sbjct 1839 CGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTGTCCGAGTACGTTGTGAA- 1781 Query 517448 ACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 517505 | | || | | || |||||||| || || | | ||| | | ||||| | || Sbjct 1780 -CGTTTGAGTCTGCTTCGTCGGAATTGTCGTATTACGCTTAATCAGAGCCGTCATTACAC 1722 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 |||| || ||||| | ||| || || | |||| || |||| | | | | || | Sbjct 1721 CACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAAGCAACAGCAAGTCCTGCA 1662 Query 517566 GTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 ||| || || | |||| ||||||||||| || | ||| |||||||| || ||| Sbjct 1661 CAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACAGCTGCACCATAAGCCACA 1603 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAG 517683 |||||||| ||||||| || || || | | || || ||||| || | || || | Sbjct 1602 GCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTGAAGAAGTCCTGCAACAGC 1543 Query 517684 TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 517743 || | |||||||| ||||||| || || ||||| || || ||||| || | ||| | Sbjct 1542 TTCTGC-ACCTTAGGGATACGAGTGGAACCACCAACCAACACTATTTCGTGAATCTGGGC 1484 Query 517744 TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAA 517803 ||||||| || | ||| ||| | || ||||| || | | | | || | Sbjct 1483 CTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACCCAATGTACCACGGAATAG 1424 Query 517804 GTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTATAATCAATTCC 517860 || | | | || || ||| || | ||||| || ||| | | ||||||| || Sbjct 1423 ATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGTG---TAAAAATCAATACC 1367 Query 517861 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 517920 || |||| || |||| || | | ||||| || ||| | || |||||| || Sbjct 1366 ATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGAACTCAATGTACGTTTCGC 1307 Query 517921 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 517980 ||||||||||||||| || || | || || || ||| |||| | ||| | ||| Sbjct 1306 ACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTATTGTCACGAATGTCTTTA 1249 Query 517981 --ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTATCAAAATCTT 518036 | |||| ||| ||| |||| ||| | || | || |||||||| |||||||||| Sbjct 1248 CCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAGACGATTGTCAAAATCTT 1191 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||||||||| | |||| || | |||| | || | ||| | ||||| |||| | Sbjct 1190 CACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCATCCTCAATTG 1131 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 ||| | | |||||| || |||||||||| |||||| || | ||||| || Sbjct 1130 TCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACATTACGCTCAC 1071 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | || || || | |||||| |||| || ||||| || || |||||||| |||| Sbjct 1070 CACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCTGTAGGCTCATTAATGATTC 1011 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 |||| |||||||||||||| || ||||||||||| || ||||| | ||| || | Sbjct 1010 TCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCAT 951 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTT 518335 | || || |||||||| || ||||| || ||| ||||| || | |||| |||| ||| Sbjct 950 TGAAGTAAGCAGGAACTGTTATAACCGCGTCACTTACTGTCCTGCCCAA-ATAA---CTT 895 Query 518336 ---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGC 518392 || | |||||||| | || | ||| || ||||| | || | ||| | | Sbjct 894 TCAGCAACCTCCTTCATTTTCGTCAACACCATCGACGAAATCTCCTCCGCGGAGAACAAC 835 Query 518393 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 518452 || ||| | ||| || || | | ||| ||| || | || || | | Sbjct 834 TTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCACCGACTTGAACCACCTCA 775 Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 |||||||| | |||||||| ||||| | | |||| ||| | ||| |||| Sbjct 774 AATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCGAAACGACGACCGATTAGC 715 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || |||||||| | ||||| ||||||||||| || |||| | || ||| |||| Sbjct 714 CGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGTTCTTCGCTCCATCA 655 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||| | | | || | ||||| || | ||||| || || || | ||||| ||| Sbjct 654 CCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGTGTCGTTCTGTTACCCTGA 595 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 ||||| ||||| || || ||||| |||| || | ||||| ||||| | | ||||| Sbjct 594 TCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAACACACGAATATGTTGTA 535 Query 518693 CCTAAATCAATACCAATAGC 518712 || | ||| || ||||| || Sbjct 534 CCAAGATCGATCCCAATGGC 515 >seq6821 Length=13617 Score = 172 bits (190), Expect = 4e-37 Identities = 384/571 (67%), Gaps = 18/571 (3%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || ||||| || | |||||| || || | |||| |||| |||| | ||||| ||| Sbjct 9391 GTACCACCTCCAAGATCAAATATCAGAATATTCTTTTCACCATCTT---TCTTATCTAGA 9447 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || ||||||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 9448 CCGTACGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 9507 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || |||||||| || || || | |||| ||||||||||| || || ||||| Sbjct 9508 ATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAGGCTGGGACAGTG 9567 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | || |||| || || | ||| |||| ||| | || | |||||| || | | Sbjct 9568 ACTACTGCATGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 9627 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT-----ATG 518411 || | ||| | || || | ||||||| | | |||| ||| |||| || Sbjct 9628 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 9683 Query 518412 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATAT 518471 | ||||| | ||||||||| || ||||| ||| ||| || | | | || | Sbjct 9684 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGAGTTATGT 9742 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 | ||| ||| || |||| || | || ||||| | || || | || ||||| | Sbjct 9743 CATTTTGTACAGTTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 9802 Query 518532 TATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 | || |||| || || |||| || | ||| || ||||| ||||| || | || | Sbjct 9803 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAGTCGCTCGTTT 9861 Query 518591 TC---TGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 518647 || || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 9862 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 9921 Query 518648 TCAACTTTACCATTTTGCCATACACCTACAC 518678 |||||| || ||| ||||||| |||| Sbjct 9922 TCAACTCGGCCTCCTTGAAATACACCAACAC 9952 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 9443 CTAGACCGTACGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 9502 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| | ||| ||| ||||| || | ||||||||| |||||||| ||||| | Sbjct 9503 CAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAGGCTGGGA 9562 Query 322359 CAGTAATAACTGC 322371 |||| | ||||| Sbjct 9563 CAGTGACTACTGC 9575 >seq9990 Length=9985 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 671617 AGGTTTTTGTCGAAATT-CTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAG 671675 ||||||| | ||||| |||||||| ||| |||| ||| | |||||| || ||||| | Sbjct 3574 AGGTTTTGTTGGAAATAGCTTTTATTCAGG-TCTTTCACCATCTGAATTCTTTTTCCATG 3516 Query 671676 TAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATA 671735 ||| ||||||||||| | | |||| ||| | |||||||| ||||| ||||||| Sbjct 3515 CTATGAGTGGTCGTGAAGGATTGACGGATACTGCTGTAAAAACTGCAGATACAGGTTATA 3456 Query 671736 TTCAAAGAAAACTTGTTAA 671754 | ||| ||| ||| || || Sbjct 3455 TGCAACGAAGACTAGTCAA 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777838055098840