Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq32520 333 3e-86 seq6821 152 7e-32 seq4373 82.4 1e-10 >seq32520 Length=1932 Score = 333 bits (368), Expect = 3e-86 Identities = 947/1443 (66%), Gaps = 22/1443 (2%) Strand=Plus/Minus Query 6725 AACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAAT 6784 ||| | || | ||| || || ||||| | || || | ||| ||||| | | || || Sbjct 1932 AACGTCACCTCAATCTGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAAC 1873 Query 6785 GTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTC 6844 | ||||| | | |||| ||| ||| | ||| ||||| || | || | || | Sbjct 1872 TTGCCAAGCAGATTGTTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGC 1813 Query 6845 ACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTC 6904 || |||| || || || ||||| ||| |||| | ||| | ||||| ||| Sbjct 1812 ACACCAGGCTGGTTGTCCGAGTACGTTGTGAACGTTTGAGTCTGCTTCGTCGGAATTGTC 1753 Query 6905 GTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGA 6964 ||||| | | ||| | | ||||| | |||||| ||||| || || || |||| Sbjct 1752 GTATTACGCTTAATCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAAT 1693 Query 6965 GGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATG 7024 || | |||||| | | | || ||| || |||| || | ||||| ||| || Sbjct 1692 GGAGCCACGTCAAGCAACAGCAAGTCCTGCACAGCCTCACACTTGTCACCACTTAGAATA 1633 Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 || || || || | || || || || || || ||||| || ||||| | ||| |||| Sbjct 1632 GCTGCCTGCACAGCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAAC 1573 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 || || ||||| || | ||| |||| | || | || ||||| || || || ||| Sbjct 1572 TCCTTCCCGTTGAAGAAGTCCTGCAACAGCTTCTGCACCTTAGGGATACGAGTGGAACCA 1513 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 || ||||| || ||||| | | | | ||||| ||||| | ||||| | | || Sbjct 1512 CCAACCAACACTATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTC 1453 Query 7205 TCGACAGGTTCCATACATTTAC---GGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || ||||| ||| || ||| |||| | || | || |||||||| |||||| Sbjct 1452 TCAACAGGACCCA---ATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCA 1396 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 || ||||| || || || ||||||| || || | ||||| ||||| || | | ||| Sbjct 1395 CGAGTAATCGACGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTT 1336 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || | ||||| || || || || || || ||||| || |||| | ||||| | Sbjct 1335 TGGGTGCTCGAACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAAT 1276 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTG 7440 |||||| || | ||| ||||| | ||| | ||||||| || | ||||| Sbjct 1275 GCACGCTTATTGTCACGAATGTCTTTACCAAATTTCTTCTGGAACTCTTTCACA-AAGTG 1217 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | || | || ||||||||||| |||||||||||||| || || || | || Sbjct 1216 ATCCACCAGACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTT 1157 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 || || || ||||| | ||||| | || | || |||||||| ||||||||||||| Sbjct 1156 CACCTCGAATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAA 1097 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 ||||| || | || || || | | ||||| || | ||| || || || || Sbjct 1096 ATCAAATATCAACACATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGC 1037 Query 7621 CGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 ||| || || || |||||||| || | || ||| || || ||||| |||| | |||| Sbjct 1036 CGCAGCTGTAGGCTCATTAATGATTCTCAACACA-TTAAGACCAGCTATAGCACCTGCAT 978 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 ||||||| ||||| ||||| || || ||||| || || || |||| |||||||| Sbjct 977 CTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCAC 918 Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 | ||| || | || | ||| ||| || | || |||||||| || | |||||||| | Sbjct 917 TTACTGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATTTTCGTCAACACCATCGACG 858 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 ||||||| || || | ||| || | ||||| ||| | ||||| |||| | | | Sbjct 857 AAATCTCCTCCGCGGAGAACAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCT 798 Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 || || | | | | |||| | | | ||||| |||||||| || || ||| | Sbjct 797 TA---CCACCGACTTGAACCACCTCAAATGGCCAATGCTTCATATC-ACTCTGAACTGAT 742 Query 7920 GG-TC--CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 || || ||||| | ||||| || ||||| |||||||| ||||| ||| | || | Sbjct 741 GGATCATCGAAA--CGACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGAT 684 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 | || || |||||||||||| | || || || | ||| ||| | || || |||| Sbjct 683 TAATAGCCACTTGGTTCTTCGCTCCATCACCAATTAAACGCTCAGCA---TCTGTGAACG 627 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 | || || || ||||||| || || || || || ||||| || || || | | | Sbjct 626 CCACATAACTCGGTGTCGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCAT 567 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCA 8156 || | || || || |||||||| ||||| || | ||| || || || || | || || Sbjct 566 GCTGGAAAACACCAACACACGAATATGTTGTACCAAGATCGATCCCAATGGCGTTAGGCA 507 Query 8157 TTT 8159 ||| Sbjct 506 TTT 504 >seq6821 Length=13617 Score = 152 bits (168), Expect = 7e-32 Identities = 252/363 (69%), Gaps = 3/363 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||||| || || || || ||||| || | ||| Sbjct 9301 TCGAAGTCCTCTCCACCAAGATGTGTGTCACCATTTGTAGCAACTACTTCGAACACACCG 9360 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | ||||| || || |||||||| || || ||||| || || | Sbjct 9361 TTCTCAATTGTAAGTAGTGAAACGTCGAAAGTACCACCTCCAAGATCAAATATCAGAATA 9420 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | ||||| |||||| ||||||||||| || || || || ||||||||| Sbjct 9421 TTCTTTTCACCATCTTT---CTTATCTAGACCGTACGCAATCGCAGCAGCAGTTGGTTCA 9477 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||| || || || |||| |||||||| || | |||||||| || || || || Sbjct 9478 TTAATGATCCGGAGTATATTCAAACCAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGC 9537 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | |||||||| ||||| ||||| || || || || | || || || || || ||| Sbjct 9538 TGTGCGTCGTTAAAATAGGCTGGGACAGTGACTACTGCATGGGTAACCTTTTTGCCAAGA 9597 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || ||||| || | |||||||| || | ||||| | || ||||| || | ||| Sbjct 9598 TAGGATTCAGCAAACTCTTTCATCTTCCCTAACACCATAGCAGAGATCTCCTCTGGGGCA 9657 Query 7817 AAC 7819 ||| Sbjct 9658 AAC 9660 >seq4373 Length=18302 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || ||||| |||||||||||||| || || |||| |||||||| ||||| Sbjct 10924 ATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTCCAT 10865 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 10864 AAAGTCAAAAGGATT 10850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634655338917600