Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq26917 98.7 1e-15 seq16689 98.7 1e-15 >seq26917 Length=2823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/264 (70%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 154734 TCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTC 154793 ||||||||||| || ||||||||||||||| ||||| || |||| ||| | || Sbjct 2529 TCAGCACATGGGACGAATCCTGCTAGTGCTCAAATGGCTGGAATGACTGTTAAACACGTG 2470 Query 154794 AAGTGTGATGATGA-TGGTAACATAGACATCAAAGATCTAGA-GAAGAAAGCAATCATGA 154851 || | | || ||||| ||||||| || ||||||| ||| ||| || | Sbjct 2469 AAAACT-ACATCGACTGGTAGTCTAGACATGAACCATCTAGAAGAACAAACTTCTC-TAT 2412 Query 154852 ATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAA 154911 ||| | | | || || |||||||| || || ||| |||| |||||||||||| | Sbjct 2411 ATAAAGATCATCTAGCAGCCATTATGATCACCTATCCAAGTACATTTGGTGTATTTGATA 2352 Query 154912 CTAACATT-AGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGAT 154970 ||| || ||| || | ||| | |||||||| || |||||| ||||| | | | ||| Sbjct 2351 GTAATGTTCAGAAAG-TGTGTGAAATCGTTCACGAAGCTGGTGGACAGGTTTTTATGGAT 2293 Query 154971 GGAGCAAATCTAAATGCACAGGTA 154994 || || ||| | |||||||||||| Sbjct 2292 GGTGCCAATTTGAATGCACAGGTA 2269 >seq16689 Length=5739 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 |||| || | || || ||||| | ||||| ||||| || ||||||||||||||||||| Sbjct 1960 TACAAACGCGGGAACAACATATTCGTAGAGATAAAGCCACAAGTAACATCTGCACAGCTC 2019 Query 153970 AGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTA 154028 | ||| | || ||||||||| ||| |||||||||| |||||||| | || ||| || Sbjct 2020 AAGCATTACTTGCTAATATGGCTGCTTTCTATGCAGTTTATCATGGGCCGGAAGGATTA 2078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578777376777600