Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16689 98.7 1e-15 seq26917 82.4 9e-11 >seq16689 Length=5739 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 158585 TACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCAC 158644 |||| || | || || ||||| | ||||| ||||| || ||||||||||||||||| | Sbjct 1960 TACAAACGCGGGAACAACATATTCGTAGAGATAAAGCCACAAGTAACATCTGCACAGCTC 2019 Query 158645 AAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTA 158703 ||||| | || ||||||||| ||| |||||||||| |||||||| | || ||| || Sbjct 2020 AAGCATTACTTGCTAATATGGCTGCTTTCTATGCAGTTTATCATGGGCCGGAAGGATTA 2078 >seq26917 Length=2823 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACAT-CAGACAGATATG 159605 |||||||| || |||||| |||| |||||||||||| | || | |||| || | || Sbjct 2391 ATTATGATCACCTATCCAAGTACATTTGGTGTATTTGATAGTAATGTTCAGAAAG-TGTG 2333 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 | | || ||||| || |||||| ||||| | | | |||||||| ||| | |||||||| Sbjct 2332 TGAAATCGTTCACGAAGCTGGTGGACAGGTTTTTATGGATGGTGCCAATTTGAATGCACA 2273 Query 159666 GGTA 159669 |||| Sbjct 2272 GGTA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587609132510400