Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4373 268 1e-66 seq5303 118 1e-21 >seq4373 Length=18302 Score = 268 bits (296), Expect = 1e-66 Identities = 519/761 (68%), Gaps = 10/761 (1%) Strand=Plus/Minus Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 ||| | |||||| || || || | ||||| ||| || ||||| | |||||||| Sbjct 10785 TTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCAT 10726 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 ||| ||||| | || ||||| || |||| | ||| || |||||||| |||||||| Sbjct 10725 TCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACTGCCTC 10666 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT---AGAAGATGTTTAAACAT 18956 | ||| || || |||| | |||| | | ||| | | | || ||||||||| | Sbjct 10665 TCTTATTATTGACTCAACACGTTCTT---TCGAAGGCTTTTTGATAATATGTTTAAATAA 10609 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 | ||| || ||||||||||| ||||| ||||||||||| || |||||||| ||| | Sbjct 10608 TAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGA 10549 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | |||||||| || |||| ||| || | ||||||||||| || || |||||||| Sbjct 10548 CAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAA 10489 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || | |||||| |||||||||||||||| || | |||| || || ||| | || Sbjct 10488 AAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATC 10429 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA--TTGTCTCTATA 19194 |||||| | | |||||| | |||||| ||| ||||| | | ||| || ||| Sbjct 10428 TCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATG 10371 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | || || ||| | | || | | ||||| | |||| ||| || |||||| | Sbjct 10370 GCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAG 10311 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| || |||||||| || ||||| ||||| | ||| ||||| || | | ||| Sbjct 10310 TACATTTCAGAGTGAATATTCTCAATAGCTATCTGCATTCCATAAAAGCAACGAACCTCT 10251 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||| ||||| | || | ||| | | || || || ||||| ||||| Sbjct 10250 GGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTTCTCGAGTACAATTCCGTCACTC 10191 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 || ||||| || ||||| || | || ||||| ||| | | | | | | Sbjct 10190 GCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCC 10131 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 |||| | | |||||| || ||||| || ||||| || |||||||||||||| | || Sbjct 10130 CAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCC 10071 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 || ||||| | | ||| | ||| |||||| ||| || || Sbjct 10070 TTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGAA 10030 >seq5303 Length=16207 Score = 118 bits (130), Expect = 1e-21 Identities = 262/387 (68%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 3717 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAG 3776 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 |||||||| || ||||| |||||||||| | | | | || |||||||| | ||| | Sbjct 3777 TTAAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 3836 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTA 47225 |||| | |||||||||||||| || || | |||| | || | || | || Sbjct 3837 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCG 3896 Query 47226 GTATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaag 47284 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 3897 ATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCGTCCGACCACAA 3955 Query 47285 ttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATA 47343 | || || ||| | | || ||||| ||||| ||||| || ||||| ||| || Sbjct 3956 CCCTAATTTAG-TAAGATCATCAAGAAGATATGGATTCACAATCTGGAATTCACCACTTA 4014 Query 47344 GTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAA 47403 || | || | ||| || ||||| | ||||| |||| ||||| || |||| || Sbjct 4015 ACACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAA 4074 Query 47404 TTTGAGCAGTTGATGCTGTAGGCATGG 47430 | |||| ||||||||||| ||||||| Sbjct 4075 TCTGAGATGTTGATGCTGTTGGCATGG 4101 Score = 105 bits (116), Expect = 8e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 ||| |||||||||| ||||| ||||| | || || | ||| | | || ||| Sbjct 6845 CAAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTAT 6904 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || || || ||||| || || |||||||||| | ||||| ||| | || | Sbjct 6905 GAACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGT 6964 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | ||||| |||||||||||||| ||| ||||| | | ||||||||||| || | || | Sbjct 6965 CGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTG 7024 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | |||||| | ||||| | ||| || || ||||| |||||||||| || || | Sbjct 7025 GTTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 7084 Query 48652 ACAATTTATATGT 48664 || ||||| || Sbjct 7085 TCAGGTTATACGT 7097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561686234709600