Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq32520 212 5e-49 seq6821 165 7e-35 seq2618 145 6e-29 >seq32520 Length=1932 Score = 212 bits (234), Expect = 5e-49 Identities = 411/599 (69%), Gaps = 11/599 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || |||||| ||||||||||||| || |||| ||| Sbjct 515 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 574 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||||||||| ||||||||||| || || |||||| | ||||| Sbjct 575 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 634 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | |||| ||||||||| ||| || | |||| || |||||| || ||| Sbjct 635 GATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAATCCAACAAAT 694 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || || |||| || | |||| ||||| | | |||||| Sbjct 695 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTCGATGATCCATCAGTTCAGAGT 754 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| || | | ||| | || ||| || | | ||| | | Sbjct 755 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 814 Query 550292 ACTCATGAAGGATCTGTTAAACAATT-TTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348 || |||| || ||| | || ||| | | || | ||||| || ||||| || Sbjct 815 GAGTAT-AAGG--GTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTG 871 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 | ||||||||| | | | | || |||| || || ||| | || || || || Sbjct 872 ACGAAAATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACAGTAAGTGACGCGGTTAT 930 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||| || || || || || |||||| ||||||||||| || |||||||| || ||| Sbjct 931 AACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTAT 990 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| |||||||| | | || || ||||| ||||| ||||| ||| |||| ||||| Sbjct 991 AGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCTACAGCTGCGGCAATTGCCTATGG 1050 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | || || | || | || | |||||| | || ||||||| |||| |||| Sbjct 1051 TTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 1109 >seq6821 Length=13617 Score = 165 bits (182), Expect = 7e-35 Identities = 377/563 (67%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | ||| || |||||| |||||||| |||||||| |||||||| | Sbjct 9952 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 9893 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| || || || | ||||| ||||| || | || |||| ||||| || | Sbjct 9892 TTACTCCCTCATACGTAGCATTCACTCCGGAAAACGAGCGACTAATTGGGGATGCTGCTA 9833 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || | || || ||||| || || ||||| || | || | | ||||||| Sbjct 9832 AAAACCAGCTGACATCAAATCCAGAAAACACAATTTTCGACGTCAAGAGACTTATTGGAA 9773 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | | || |||| || ||||| || || || | |||| ||||| |||||| Sbjct 9772 GGAAGTTCGATGAATCAACTGTACAAAATGACATAACTCATTACCCTTTTTCCGTTGTTA 9713 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319 || ||||| ||||| |||| | || | ||||| | | || | ||| Sbjct 9712 ATAAAAAGAACAAACCATATATCGAAGTT---CACGTTGGATCAGAAGTCAAGACGTTTG 9656 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | ||||| | || || ||||||| ||| ||| |||||| | || | | | Sbjct 9655 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 9596 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| || | ||||| |||||||| | ||||| ||||| |||||||| ||| |||| | Sbjct 9595 TTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAACGACGCACAGC 9536 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | || || || ||||||||||| |||||||| | ||| | || || || || |||| Sbjct 9535 GCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATACTCCGGATCATTAATG 9476 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 |||| ||||||||||| |||| || || || |||| | || ||| ||| ||| Sbjct 9475 AACCAACTGCTGCTGCGATTGCGTACGGTCTAGATA---AGAAAGATGGTGAAAAGAATA 9419 Query 550560 TACTCATCTTTGATTGTGGAGGT 550582 | || || |||||| ||||||| Sbjct 9418 TTCTGATATTTGATCTTGGAGGT 9396 >seq2618 Length=24172 Score = 145 bits (160), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||| || || | ||||||| | Sbjct 20936 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 20877 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| || | ||| || || || || || |||||| Sbjct 20876 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 20817 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||||||||| || ||||| || |||||||||| | | ||| || || Sbjct 20816 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 20757 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || ||||| || || |||||||| ||||| Sbjct 20756 ATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 20719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026115525568600