Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4373 266 4e-66 seq17162 82.4 9e-11 >seq4373 Length=18302 Score = 266 bits (294), Expect = 4e-66 Identities = 574/854 (67%), Gaps = 52/854 (6%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || ||||| |||||||||||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------AGTACTACATGATAATT 36996 |||||| ||||| ||||| | || ||| || | | || | || |||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 36997 -----------------CC---TTCA----GAAGCCTATCCGCAACAAATTCTATGTATT 37032 || |||| | ||||| || || | |||||| ||||| | Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 |||||| |||| | || || ||||||| | ||||| | || ||| | ||| Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152 | |||||||| || || ||| | | ||| ||| | ||||| | | || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGCT 10631 Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209 ||| | ||||| ||||| |||| ||| || ||||||||||| | ||||| ||||||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269 | || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 | ||||| || |||||||| |||| |||||| ||||||||||| || | | |||| Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | ||||| || | |||| |||||| | | || ||| | |||||| | || Sbjct 10450 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 10391 Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 |||| || | ||| || || || || |||||||||| |||||| ||| | || Sbjct 10390 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 10333 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 || |||||||||| |||| |||||||||||||||||||| |||||||||||||| | Sbjct 10332 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCAT 10273 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACC--TCTTAGCTAAG 37565 |||||||| || | | | || | | || || || | || | ||| || | | Sbjct 10272 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAG--AGG 10215 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 || || || || || ||||| || ||||||||||| | || || ||| ||||| Sbjct 10214 TTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGA 10155 Query 37626 CTTTCATCA--TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 | ||| || ||| | | ||||| | | |||||| || ||||| || || | Sbjct 10154 CGTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 10097 Query 37684 CAACGGTCCAAAAA 37697 | || ||||||||| Sbjct 10096 CCACAGTCCAAAAA 10083 >seq17162 Length=5546 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| |||||||||||||| || ||| ||||||| ||| ||| ||| | || || || Sbjct 1914 AGGGGTTTTACATACAAAGTTATGGTCAGTTGATGCCAAAAATGGTTATGTGGGTAGCGC 1973 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGT 153376 |||||||| |||||||||||||| ||||| Sbjct 1974 AAATATGGACTGGAGATCACTAACACAAGT 2003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591871525845600