Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq32520 194 1e-43 seq6821 187 2e-41 seq2618 152 3e-31 seq2601 105 4e-17 >seq32520 Length=1932 Score = 194 bits (214), Expect = 1e-43 Identities = 379/555 (68%), Gaps = 14/555 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||| | || || || || ||||| | ||||| || |||| ||| Sbjct 515 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 574 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || |||||||||||||| || ||||| ||||| ||||| ||||| | || || Sbjct 575 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 634 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || |||| | | | ||||| |||| || || | |||| || |||||| ||| Sbjct 635 GATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAATCCAACAAAT 694 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | | || |||||| ||| |||||| | | || || | Sbjct 695 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTCGATGATCCATCAGTTCAGAGT 754 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 |||||| |||||||| ||| ||||| | | || |||||||| | | || | Sbjct 755 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 814 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | || | | ||||| | || || || |||| | ||||| || ||||| || Sbjct 815 GAGTATAAG--GGTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGA 872 Query 474687 CCAAAATGAAACAAACCGCGAGCTCA----TATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | |||||||| | | ||| | ||| |||| || || ||||| ||| || || Sbjct 873 CGAAAATGAAGGA----GGTTGCTGAAAGTTAT-TTGGGCAGGACAGTAAGTGACGCGGT 927 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| ||||||||||||||| |||||||| || Sbjct 928 TATAACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGC 987 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || ||||||||||| || | || |||||||| || ||||| || ||| |||| || Sbjct 988 TATAGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCTACAGCTGCGGCAATTGCCTA 1047 Query 474862 TGGTCTTGATAAGAA 474876 |||| | || ||||| Sbjct 1048 TGGTTTAGACAAGAA 1062 >seq6821 Length=13617 Score = 187 bits (206), Expect = 2e-41 Identities = 371/539 (69%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || ||||| ||||| || ||||| || | || || ||||| || | || || Sbjct 9927 AGTTGAGATTATTGCGAATGATCAGGGTAACAGGATTACTCCCTCATACGTAGCATTCAC 9868 Query 474448 T---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | |||| || | || ||||| |||||||||||| | || |||| |||| ||||| | Sbjct 9867 TCCGGAAAACGAGCGACTAATTGGGGATGCTGCTAAAAACCA-GCTGACATCAAATCCAG 9809 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || ||||| || | || ||| | ||||| | || || ||||| | ||||| | Sbjct 9808 AAAACACAATTTTCGACGTCAAGAGACTTATTGGAAGGAAGTTCGATGAATCAACTGTAC 9749 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 || ||| || ||||| |||||| || | ||| ||||||||||| | Sbjct 9748 AAAATGACATAACTCATTACCCTTTTTCCGTTGTTAATAAAAAGAACAAACCATATATCG 9689 Query 474624 AAGCAATACACGCAGG-TGA-AACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGG 474680 ||| | |||| || | | || | || | ||| | || || | || ||| | |||| Sbjct 9688 AAG---TTCACGTTGGATCAGAAGTCAAGACGTTTGCCCCAGAGGAGATCTCTGCTATGG 9632 Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | |||| || |||||| | || || |||||||| || | || || |||||| Sbjct 9631 TGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATCTTGGCAAAAAGGTTACCCATGCAG 9572 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 || | ||||| ||||| |||||||| || | || || || ||||| |||||||| || | Sbjct 9571 TAGTCACTGTCCCAGCCTATTTTAACGACGCACAGCGCCAGGCAACCAAAGATGCTGGCA 9512 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| ||| | ||| | | || || |||||||||||||| || || || |||| | Sbjct 9511 CAATTGCTGGTTTGAATATACTCCGGATCATTAATGAACCAACTGCTGCTGCGATTGCGT 9452 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | ||||| |||||||| || || ||| ||| || | || |||||| ||||||| Sbjct 9451 ACGGTCTAGATAAGAAAGATGGTGAA-AAG--AATATTCTGATATTTGATCTTGGAGGT 9396 Score = 93.3 bits (102), Expect = 3e-13 Identities = 317/489 (65%), Gaps = 20/489 (4%) Strand=Plus/Minus Query 475875 TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGA 475934 |||| ||| | || ||| ||| | | || ||| ||||||| || || || | |||| Sbjct 8839 TTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTCGGTGGTGTCATGA 8780 Query 475935 CTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTT 475994 | || |||||| |||||||| ||||||| ||| || || | ||||||| || Sbjct 8779 CGAAACTTATTCCAAGAAATACAGTTATCCCAACCAAGAAGTCGCAGATATTTTCTACAG 8720 Query 475995 ATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTA 476054 | |||| || || | ||||| || || ||| | ||||| |||||| | | || | Sbjct 8719 CTGCTGACAACCAGCCGACTGTCACGATACAAGTTTTTGAGGGTGAACGGGCTATGAC-A 8661 Query 476055 AAGAT-AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 ||| | ||| | ||||| | || | || |||||||||||| || | | || Sbjct 8660 AAGTTCAATCATTTTCTTGGCAAGTTCGACCTGACAGGTATTCCTCCGGCACTGCGTGGT 8601 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| || || || ||||| | || || || || | ||| | || Sbjct 8600 GTTCCACAAATTGAAGTGACGTTCGAGATTGACGTTAACGGCATACTGAGAGTTTCCGCA 8541 Query 476174 TGTGATAAA------TCTAGTAACAAGAGTAAAAATATAACT-ATTACAAACAATCGTGG 476226 |||||| |||||| || |||||| || | | || | || | | | | Sbjct 8540 GAAGATAAAGGGACCGGTAGTAAAAA----CAAAATAGAAATCAATAAAGACCAACATCG 8485 Query 476227 --TAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAA 476284 |||| || |||| |||| || ||| || |||| || || |||||| || Sbjct 8484 CTTAGA-----TGCAGAAGAAATCGAAAAAATGATTAATGATGCAGAACAGTTTGCAGCT 8430 Query 476285 GCTGATAACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATGTTCAT 476344 | ||||| ||| ||||| | ||||||| | ||||| | |||| || || | || Sbjct 8429 TCAGATAAGAAGTTAAAAGAGCGTGTTGATGCCAGAAATGAGTTCGAAAGTTCTGCTTAT 8370 Query 476345 AGTGTAAAA 476353 | | | ||| Sbjct 8369 ACTCTCAAA 8361 >seq2618 Length=24172 Score = 152 bits (168), Expect = 3e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| |||||||||||||| ||| || | |||||| || | ||||| Sbjct 20940 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 20881 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| ||||| || ||||||||||| ||||||||||| || || || || || Sbjct 20880 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 20821 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || || || ||||| || ||||||| | | ||| || Sbjct 20820 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 20761 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| || || || ||||| |||||||| || Sbjct 20760 GGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTG 20722 >seq2601 Length=24241 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | |||||| | ||||| |||||||| || | ||||||| Sbjct 23769 TTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCAAATATCAAACGTTGT 23828 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| ||||| |||||||||||||| || ||| |||||||||||| Sbjct 23829 TGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATAGTATCA 23888 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || | ||| ||||| || || || || | ||||| ||||| ||||| Sbjct 23889 CTAGGCTCAACCTCCAA-CGTAATCGTCTTTCCTGTCAACGTCTTTACGAATATTTG 23944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265599503600720