Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq32520 511 6e-140 seq6821 178 2e-39 seq2618 168 9e-37 seq2601 120 4e-22 >seq32520 Length=1932 Score = 511 bits (566), Expect = 6e-140 Identities = 982/1431 (69%), Gaps = 25/1431 (2%) Strand=Plus/Plus Query 195289 AATGTCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCA 195348 |||| || | || ||||| |||||| | || || || || || ||||||||||| | || Sbjct 505 AATGCCTAACGCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCA 564 Query 195349 AAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGT 195408 ||| || ||||| || | ||||| || || ||| | || || || || || Sbjct 565 GCATGGCAAAGTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGT 624 Query 195409 TGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAA 195468 || || |||||| ||| ||| | |||| |||| || || || || ||||| || Sbjct 625 GGCGTTCACAGATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAA 684 Query 195469 CCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCG--GATAAG 195526 || | ||||| || ||||| |||||||| || || ||||| ||||| ||| Sbjct 685 TCCAACAAATACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCG--TTTCGATGATCCA 742 Query 195527 AAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAG 195586 ||| || ||||| ||| | ||| | | ||| || |||| | | | || |||| Sbjct 743 TCAGTTCAGAGTGATATGAAGCATTGGCCATTTGAGGTGGTTCAAG---TCGGTGGTAAG 799 Query 195587 CCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCG 195646 | | |||| |||||| | | | |||||||| || || | | || || |||||| Sbjct 800 CTGAAGATTCGTGTTGAGTATAAGGGTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCG 859 Query 195647 TCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAA 195706 || |||||||||| || ||||||||| ||| ||| || |||| | || || | Sbjct 860 TCGATGGTGTTGACGAAAATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACAGTAAGT 919 Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 || || ||| | || || ||||||||||||| ||| ||||| || || || || || Sbjct 920 GACGCGGTTATAACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGAT 979 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGC 195825 || | |||||| || ||||| || ||| || ||||| || ||||| || ||||| || || Sbjct 980 GCAGGTGCTATAGCTGGTCTTAA-TGTGTTGAGAATCATTAATGAGCCTACAGCTGCGGC 1038 Query 195826 AATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCT 195885 |||||| |||||| | |||||||| | | || ||||| ||||| |||||| | Sbjct 1039 AATTGCCTATGGTTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTT 1098 Query 195886 CGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAA 195945 ||||||||||| |||||||| || | | | ||||| | |||||||||||| || || Sbjct 1099 GGGTGGTGGTACATTTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAA 1158 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA 196005 | |||||||||||||||| || | || ||||||||||| || ||||| | ||| Sbjct 1159 GTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGTCTGGTGGATCA 1218 Query 196006 -TTTGTCTGATGAGTTCCGTCGAAAGAATAAG--AAAGATATTTCTGGAAATCCTAGGGC 196062 ||||| | ||||||| ||| ||| | ||||| ||| || ||| | || Sbjct 1219 CTTTGT-GAAAGAGTTCC--AGAAGAAATTTGGTAAAGACATTCGTGACAATAAGCGTGC 1275 Query 196063 TCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCA 196122 | ||||| || || || |||||||||||||| ||||| || | ||| | | || Sbjct 1276 ATTGCGTCGCCTGAGAACAGCATGTGAACGTGCGAAACGTACATTGAGTTCGAGCACCCA 1335 Query 196123 AACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCG 196182 ||| | | |||||||| ||||||| ||| || ||||| || || || | ||||| || Sbjct 1336 AACGAATCTGGAGATTGACTCGTTGTGTGATGGTATTGATTTTTACACGTCGATTACTCG 1395 Query 196183 TGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTA-TGGAACCTGTTGAAC 196241 |||||| ||||| ||||| || | ||| | || | || | ||| |||||||| Sbjct 1396 TGCACGATTTGAGGAGTTGAATGCCGATCT-ATTCCGTGGTACATTGGGTCCTGTTGAGA 1454 Query 196242 AAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAG 196301 | | | || || || |||||||||||| | || || | ||||| || | || || | Sbjct 1455 AGGCTTTGCGAGATGCTAAGATGGATAAGGCCCAGATTCACGAAATAGTGTTGGTTGGTG 1514 Query 196302 GATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGAT 196360 | || || ||||| || ||| | || || || || | | ||||||||| || || Sbjct 1515 GTTCCACTCGTATCCCTAAGGTGCAGAAGCTG-TTGCAGGACTTCTTCAACGGGAAGGAG 1573 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 || |||||| | || || ||||||||||| || ||||||||||| || || ||||| ||| Sbjct 1574 TTGAACAAATCTATTAATCCGGATGAAGCTGTGGCTTATGGTGCAGCTGTGCAGGCAGCT 1633 Query 196421 ATTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCA 196477 ||||| | ||| |||||| | | || || || | ||| | ||||| || || Sbjct 1634 ATTCT---AAGTGGTGACAAGTGTGAGGCTGTGCAGGACTTGCTGTTGCTTGACGTGGCT 1690 Query 196478 CCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAAC 196537 || | || |||||||||||||| || |||||||| ||||| | ||| | | || Sbjct 1691 CCATTGTCACTGGGTCTTGAAACGGCTGGTGGTGTAATGACGGCTCTGATTAAGCGTAAT 1750 Query 196538 ACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGT 196597 || || |||||||| ||| || ||| || ||||||| || || || || || ||| Sbjct 1751 ACGACAATTCCGACGAAGCAGACTCAAACGTTCACAACGTACTCGGACAACCAGCCTGGT 1810 Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGA 196657 || | ||| || || | || || || || | | | ||||| ||| |||| ||||| Sbjct 1811 GTGCTTATCCAGGTGTTCGAGGGTGAGCGTGCTCTGACGAAGGACAACAATCTGCTTGGC 1870 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 | ||||| | | || || ||| |||| || | ||| ||| |||||| Sbjct 1871 AAGTTCGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTACTCCCCAGATT 1921 >seq6821 Length=13617 Score = 178 bits (196), Expect = 2e-39 Identities = 910/1433 (64%), Gaps = 56/1433 (4%) Strand=Plus/Minus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 |||||||||||| ||| | || || |||||||| ||||||| || || ||| | | Sbjct 9952 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 9893 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 ||||| || ||||| || || || || || || || || |||| ||||| || | Sbjct 9892 TTACTCCCTCATACGTAGCATTCACTCCGGAAAACGAGCGACTAATTGGGGATGCTGCTA 9833 Query 195450 AAAATCAGACAGCTATGAACCCTATCAAT-ACTGTCTTTGACGCGAAGCGTCTTATTGGT 195508 |||| ||| | | || || | | || || | || |||| ||| | |||||||| Sbjct 9832 AAAACCAG-CTGACATCAAATCCAGAAAACACAATTTTCGACGTCAAGAGACTTATTGGA 9774 Query 195509 CGCAAGTTTTCGGATAAGAAA--GTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTG 195566 | ||||| || || || || ||| | || |||| || || | | Sbjct 9773 AGGAAGTT--CGATGAATCAACTGTACAAAATGACATAA---------CTCATTACCCTT 9725 Query 195567 TTCCCGGTGTGGCTGATAAG--CCTATGATTAATGTTGAATTTCACGGTG----AGAAGA 195620 || ||| ||| | | ||| | | || || | ||| |||||| || ||||| Sbjct 9724 TTTCCGTTGTTAATAAAAAGAACAAACCAT--ATATCGAAGTTCACGTTGGATCAGAAGT 9667 Query 195621 AACAA--TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGC 195678 | | ||||| || || || || || |||||||||| |||||||| ||| ||| Sbjct 9666 CAAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGC 9607 Query 195679 GGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 ||||| | | || |||| || | ||||||| || ||||| || || || || | Sbjct 9606 TGAATCCTATCTTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAA 9547 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAG 195798 || |||| || ||||| || || || |||| | ||||| ||| | || || | Sbjct 9546 CGACGCACAGCGCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATACTCCG 9487 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGA 195858 || || ||||||||||| || ||||| ||||| || ||||| || ||| || || | Sbjct 9486 GATCATTAATGAACCAACTGCTGCTGCGATTGCGTACGGTCTAGATAAG---AAAGATGG 9430 Query 195859 AGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAA 195918 || || ||| | |||| |||||||| || |||||||| || || || ||||| || | Sbjct 9429 TGAAAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCACTACTTAC 9370 Query 195919 TATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGA 195978 ||||| ||| | ||||||||| ||||| |||||| || ||||| ||||| || Sbjct 9369 AATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTGGAGA 9310 Query 195979 AGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAA 196038 || ||||| |||| || | |||||| | | || | |||||| || Sbjct 9309 GGACTTCGACCAACGTGTTGTTGATCATTTCGCAAAGCTATTTCTGAAAAAGAAGGGCAA 9250 Query 196039 AGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATG-TGAACGTGCCA 196097 ||||||| ||| | || | | || | ||| | | | |||| |||| Sbjct 9249 AGATATTAAGACCAATAAACGTGCAGTACAAAAACTGA-GACGGGAAGTTGAAAAAGCCA 9191 Query 196098 AACGAACTCT-----CTCTTCTACGGCTCAAACAATGGTTGA-GATTGATTCGTTGTTTG 196151 || ||||||| | || | | || ||| || | ||||| || | ||| Sbjct 9190 AAAGAACTCTAAGTACACTCC--CATCTTTTACA----TTAACAATTGAGTCCCTTATTG 9137 Query 196152 ACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATT 196211 | || || || | ||| |||| || ||| ||||| | | ||| || | Sbjct 9136 ATGGTGAGGATTTTTCCGAAACACTTACACGAGCAGCATTTGAGAAAATTAACATGGACT 9077 Query 196212 TGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGT 196271 |||| || | ||||||| || || |||| ||| || || ||| | ||| Sbjct 9076 TGTTCTTAAAAACTTTGGAACCAGTCAAAAAAGTCCTTGAAGATGCGGGCATGAAAAAGG 9017 Query 196272 CTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGA 196331 | |||||||| || | || || || || || || | |||||| ||| ||| | Sbjct 9016 AAGATATTGATGAAGTTATTCTAGTTGGCGGGTCTACTCATATTCCTAAGGTTCGTGAAC 8957 Query 196332 TGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAG 196391 | || | ||||| | | ||||| | |||| | | || ||||||||||||| Sbjct 8956 TTCTACGAAATTTCTT---TGAAAAAGAACTTAACACAGGAGTTAATCCGGATGAAGCAG 8900 Query 196392 TTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCC 196451 |||| || ||||| || ||||||| || || | ||||| || || | | || Sbjct 8899 TTGCGTACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAAAACACT--GGT-- 8844 Query 196452 AAGATCTTCTGCTACTTGATGT-TGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGT 196510 | | || |||| | ||||| ||| || | | ||||| ||||||| | |||||| Sbjct 8843 --GGTGTTGTGCTTTTAGATGTATGC-CCATTGACTTTGGGTATTGAAACGGTCGGTGGT 8787 Query 196511 GTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTT 196570 || ||||| ||| ||||| || || ||| ||| || || |||||| || | ||| Sbjct 8786 GTCATGACGAAACTTATTCCAAGAAATACAGTTATCCCAACCAAGAAGTCGCAGATATTT 8727 Query 196571 TCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCC 196630 || || | | || || || || ||| || ||||| | ||| || ||||| | Sbjct 8726 TCTACAGCTGCTGACAACCAGCCGACTGTCACGATACAAGTTTTTGAGGGTGAACGGGCT 8667 Query 196631 CGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCC 196690 ||||| || ||| | ||||| | ||||| |||| || ||||| | |||| Sbjct 8666 ATGACAAAGTTCAATCATTTTCTTGGCAAGTTCGACCTGACAGGTATTCCTCCGGCACTG 8607 Query 196691 AGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCT 196743 | ||||||||||| ||| | || ||||| || |||| || || || || Sbjct 8606 CGTGGTGTTCCACAAATTGAAGTGACGTTCGAGATTGACGTTAACGGCATACT 8554 >seq2618 Length=24172 Score = 168 bits (186), Expect = 9e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| || || ||||| || ||||| ||||||||||| ||||| || |||||| | Sbjct 20716 AGGATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCT 20775 Query 171919 TCAGACACAATCGATAACA-TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGA 171977 | || ||||| || | || | || || || ||||||||||| |||||||| ||||| || Sbjct 20776 GCTGATACAATAGA-AGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGA 20834 Query 171978 TCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTA 172037 || ||||| || ||||||||||| ||||| || ||||||||||| || || | || || Sbjct 20835 CCAACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTA 20894 Query 172038 CAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || ||||| || || || || ||||| || | ||||| |||||| Sbjct 20895 TAATATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGT 20946 >seq2601 Length=24241 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || | || ||||| || || || | ||||||||| | Sbjct 23947 ATGCAAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 23888 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || ||||||||||| || ||||| ||||| || || || Sbjct 23887 GATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 23828 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| | || ||||||||||| ||| | |||||||||||||| || |||| |||||| Sbjct 23827 CAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 23768 Query 172042 GTTCAAAAGGA 172052 | || || || Sbjct 23767 ATCCAGAAAGA 23757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657367851940800