Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4373 165 1e-35 seq2601 102 1e-16 seq2618 98.7 1e-15 >seq4373 Length=18302 Score = 165 bits (182), Expect = 1e-35 Identities = 472/717 (66%), Gaps = 25/717 (3%) Strand=Plus/Minus Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046 || ||||| | |||||| | || || |||||| | ||||||||| || | || ||| Sbjct 10772 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10713 Query 18047 AAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105 | |||||||| || |||| || | || | ||||| ||| | |||| ||||||| | Sbjct 10712 ACTGGTAGAGCTTCTGATAAAAACTCCTGT-TCTATTAGAACTGCCTCTCTTATTAT--T 10656 Query 18106 TATTACCCTAGATTTTGGCAAT--TTATTAATTATGTGATTATAATATAATAAACACGCA 18163 | | | | | || || || || || || || ||| | ||||| ||| || Sbjct 10655 GACTCAACACGTTCTTTCGAAGGCTTTTTGATAATATGTTTAAA---TAATAGACAAGCG 10599 Query 18164 AAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGC 18223 |||||| || | ||||| ||||| |||||||| || ||||| | | || ||| Sbjct 10598 AAATCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGC 10539 Query 18224 ATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCC 18283 || | ||||| ||| || ||||| ||||| | |||||| |||| |||||| || | ||| Sbjct 10538 ATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCT 10479 Query 18284 TCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT--ATTGCTCAGTATCC 18341 || || || || || ||||| | ||| |||||| | |||| | | || |||| Sbjct 10478 TCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCA--ATCC 10421 Query 18342 ATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 | | | |||||| | | | | ||| | || | ||| || || || | Sbjct 10420 AATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGA 10361 Query 18402 AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAG 18461 | || |||||||||| ||||| || || || || ||||| ||||| |||||||||| Sbjct 10360 GAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAG 10301 Query 18462 AATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGA 18520 | || || | || ||||||||||| | | |||||| | | | |||| ||||| | || Sbjct 10300 AGTGAATATTCTCAATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGA 10241 Query 18521 AT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | || ||| || | ||||| | ||||| || || |||||| | || | Sbjct 10240 CTTCCTGGCT---GAAGCGTTCTAAGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAA 10184 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 | || || || || || |||||||| ||| | ||||||| | ||| || Sbjct 10183 AGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCA---AT 10127 Query 18639 CTAT---ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||| |||||| || | ||| || |||||| ||||||||||| | | | |||| Sbjct 10126 GTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCT 10070 >seq2601 Length=24241 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || ||||| ||||| || ||||| || || || || | | Sbjct 23947 ATGCAAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 23888 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| || || ||||| |||||||| || ||||| || ||| Sbjct 23887 GATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 23828 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | ||| ||||||||| | |||||| Sbjct 23827 CAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGAT 23792 >seq2618 Length=24172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | || ||||||||||| || ||||||| || | || Sbjct 20719 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 20778 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || || ||||| ||||||||||||||||| || ||||| ||| Sbjct 20779 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 20838 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || || || |||||| ||||| | || || |||||| Sbjct 20839 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 20898 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || || | || |||||| Sbjct 20899 ATACAGAAGGAATCAACACTTCAT 20922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731321815224000