Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4373 113 1e-19 seq2518 95.1 4e-14 seq42 89.7 2e-12 >seq4373 Length=18302 Score = 113 bits (124), Expect = 1e-19 Identities = 279/419 (67%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || ||||| |||||||| || ||||| || || || | | ||| || | Sbjct 10174 TTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCTTAGAACGCTTCAGC 10233 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 ||||| || | | || | ||| ||||||||| | ||||| || || || ||| Sbjct 10234 CAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGAATGCAGATAGCTATTGAGAAT 10293 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 || || ||| | || ||| |||||||||| ||||||||||| || | | | Sbjct 10294 ATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGG 10353 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 || || ||||||||||| ||| | || ||||| || ||| || || | ||||| Sbjct 10354 GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC- 10412 Query 133469 ATTA-AATGGATCCAGGACAAGC--GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 |||| | ||||| ||| | | | | |||||| ||| | |||||||||| Sbjct 10413 ATTAGATTGGAT--TGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCA 10470 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585 | ||| || || ||||||| |||| ||| |||| || |||||||| || || Sbjct 10471 GCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGA 10530 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 ||| || | |||||||||| |||| || ||| | || || ||||| | |||||| Sbjct 10531 GGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTTCA 10589 >seq2518 Length=24636 Score = 95.1 bits (104), Expect = 4e-14 Identities = 229/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||| || ||||||| ||||||| || |||| |||||| Sbjct 9790 ATTTCTAACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 9849 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || |||||| | ||||| || || || || || | || | |||||||| Sbjct 9850 TTGAATGTATCCAGTTTCGGCAGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 9909 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| || || || | || ||| || || ||| ||||| | |||||||| Sbjct 9910 CATAGCGTGAAAAAAAAATTCAGTGGGTGTTAAACCAGCAAGGTAGGAGTTTTCAACGAA 9969 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||| | ||| || || || | ||||| |||| ||||| || || | | | Sbjct 9970 GCCACGAGACTCAGGACCATAATC-ATCTTGGATAAAATGTGGTAGCGTACGATGACGAA 10028 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||| | || || | || || |||||||| || || |||| || | || | || | Sbjct 10029 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCACACAAGCGATGACTTGAG 10088 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 ||||||| | | | || ||||| ||||| ||||||||| Sbjct 10089 AAATATTAATACGAGAACCTTTGGAACCAGCGACCACCATAATA 10132 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 304033 TTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTA 304092 |||||||| | ||| || |||| ||||| || ||||||||||| |||||||||||| Sbjct 11315 TTGGGGTCGGCTGTGATAACAGTACGAGCTGAGAAGTCAACACGCTTTCCCATAAGATTA 11374 Query 304093 CCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCGACCC 304152 || | || |||||| | ||||| || || | | ||||| | |||||| ||||| || Sbjct 11375 CCTCGAATACGACCAGCTTTACCTTTGAGTCGTTGTTTGATAGACTTCAGTGGGCGTCCA 11434 Query 304153 GA 304154 || Sbjct 11435 GA 11436 >seq42 Length=84351 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| |||||||| || ||||| || || || || ||| | | ||| ||| Sbjct 6884 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTAATTCCTTCA 6825 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | |||| | ||||| ||| || || |||||||| Sbjct 6824 CATGTGAATGGCATAT-CTTCTTGACGATAACGAATTCCACAAGTACCTTTCTGTCCGTG 6766 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 6765 TCGACTAGCGAATTTATCACCAA 6743 Score = 86.0 bits (94), Expect = 2e-11 Identities = 171/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| || | || ||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 8598 TGCACCATGAGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAGACCACCATCACG 8539 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || ||| |||||| | || ||| ||| |||||| || || || Sbjct 8538 ACTACGACCTTCCATAGGTTGACGATTAAGTATTTGAAC---AGGACCACGAGAACGACT 8482 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| ||||||| |||||||| || | ||| || || | | || || | ||| || Sbjct 8481 ATGAATTTTATCATCAACCATATGTTTTAAACGTTGATAATAAGTTGGTCCTAAGAAAAT 8422 Query 251661 GCTCGAA-GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| |||| || |||||| | | |||||||||| ||| || || || || Sbjct 8421 TTGTGAATTTAATTTTCT-TCCAGTAAATCCATTATACATAATTTCATTACCGGTATGTT 8363 Query 251720 CATAACCA 251727 ||||||| Sbjct 8362 GATAACCA 8355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470683500147180