Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2618 114 1e-20 seq2601 86.0 5e-12 >seq2618 Length=24172 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || ||||| || || || ||||| || | || || || Sbjct 20934 ACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCC 20875 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || | | ||| || || || || || || ||||| Sbjct 20874 ATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTT 20815 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | || || | ||||| || |||| | | || ||||| || |||| Sbjct 20814 ATCTTG-AATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTA 20756 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || | || || || || |||||||| Sbjct 20755 TAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 20719 >seq2601 Length=24241 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 29595 TTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATA 29654 |||||| || ||||| || || | | || || ||| || | || || |||||| | Sbjct 23756 TTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCAAA 23815 Query 29655 TATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAG 29713 |||||| | ||| || || || |||||||| ||||||||||| ||| || | || ||| Sbjct 23816 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG-AATCTTCGCCTTCACAT 23874 Query 29714 TTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAA 29773 | || | ||| ||| | | || || || | || || || || || || || || || | Sbjct 23875 TCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTA 23934 Query 29774 CAAATATCTGCATTTT 29789 | ||||| |||||||| Sbjct 23935 CGAATATTTGCATTTT 23950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384936851179740