Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq42 105 8e-18 >seq42 Length=84351 Score = 105 bits (116), Expect = 8e-18 Identities = 197/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 193301 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 193359 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 8376 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 8434 Query 193360 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 193419 |||||||||| || ||| | ||||| |||||| | |||||||| ||| | | || || Sbjct 8435 CAACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCTCGTG 8494 Query 193420 GGCAAGT--GACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 193477 | | || | ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 8495 GTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 8552 Query 193478 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 193537 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| || Sbjct 8553 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTCTACG 8612 Query 193538 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 193582 |||| | | ||||| | |||||| | |||||| ||||||| Sbjct 8613 TGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTGTATGTTTG 8657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628058701670400