Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq32520 306 3e-77 seq6821 172 4e-37 >seq32520 Length=1932 Score = 306 bits (338), Expect = 3e-77 Identities = 885/1342 (66%), Gaps = 34/1342 (3%) Strand=Plus/Minus Query 281555 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 281614 || ||||||||||| | |||||| || ||| || || || || || ||||| || Sbjct 1839 CGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTGTCCGAGTACGTTGTGAA- 1781 Query 281615 ACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 281672 | | || | | || |||||||| || || | | ||| | | ||||| | || Sbjct 1780 -CGTTTGAGTCTGCTTCGTCGGAATTGTCGTATTACGCTTAATCAGAGCCGTCATTACAC 1722 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 281732 ||||||| ||||| | ||| || || | |||| || |||| | | | | || | Sbjct 1721 CACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAAGCAACAGCAAGTCCTGCA 1662 Query 281733 GTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 ||| || || | |||| ||||||||||| || | ||| |||||||| || ||| Sbjct 1661 CAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACAGCTGCACCATAAGCCACA 1603 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAG 281850 |||||||| ||||||| || || || | | || || ||||| || | || || | Sbjct 1602 GCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTGAAGAAGTCCTGCAACAGC 1543 Query 281851 TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910 || | |||||||| ||||||| || || ||||| || || ||||| || | ||| | Sbjct 1542 TTCTGC-ACCTTAGGGATACGAGTGGAACCACCAACCAACACTATTTCGTGAATCTGGGC 1484 Query 281911 TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAA 281970 ||||||| || | ||| ||| | || ||||| || | | | | | || | Sbjct 1483 CTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACCCAATGTACCACGGAATAG 1424 Query 281971 GTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTATAATCAATTCC 282027 || | | | || || ||| || | ||||| || ||| | | ||||||| || Sbjct 1423 ATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGTG---TAAAAATCAATACC 1367 Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087 || |||| || |||| || | | ||||| || ||| | || |||||| || Sbjct 1366 ATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGAACTCAATGTACGTTTCGC 1307 Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 282147 ||||||||||||||| || || | || || || ||| |||| | ||| | ||| Sbjct 1306 ACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTATTGTCACGAATGTCTTTA 1249 Query 282148 --ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTATCAAAATCTT 282203 | |||| ||| ||| |||| ||| | || | || |||||||| |||||||||| Sbjct 1248 CCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAGACGATTGTCAAAATCTT 1191 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||||||||| | |||| || | |||| | || | ||| | ||||| |||| | Sbjct 1190 CACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCATCCTCAATTG 1131 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 ||| | | |||||| || |||||||||| |||||| || | ||||| || Sbjct 1130 TCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACATTACGCTCAC 1071 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | || || || | |||||| |||| || ||||| || || |||||||| |||| Sbjct 1070 CACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCTGTAGGCTCATTAATGATTC 1011 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 |||| |||||||||||||| || ||||||||||| || ||||| | ||| || | Sbjct 1010 TCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCAT 951 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGCTT 282502 | || || |||||||| || ||||| || || ||||| || | |||| |||| ||| Sbjct 950 TGAAGTAAGCAGGAACTGTTATAACCGCGTCACTTACTGTCCTGCCCAA-ATAA---CTT 895 Query 282503 ---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC--TGGAGAATATT 282557 || | |||||||| | || | ||| || ||||| | || |||||| | Sbjct 894 TCAGCAACCTCCTTCATTTTCGTCAACACCATCGACGAAATCTCCTCCGCGGAGAACA-- 837 Query 282558 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| ||| | ||| || || | | ||| ||| || | || || | Sbjct 836 ACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCACCGACTTGAACCACCT 777 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 ||||||||||| |||||||| ||||| | | |||| ||| | ||| |||| Sbjct 776 CAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCGAAACGACGACCGATTA 717 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || || |||||||| | ||||| |||||||||| || |||| | || ||| ||| Sbjct 716 GCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGTTCTTCGCTCCAT 657 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||| | | | || | ||||| || | ||||| || || || | ||||| | Sbjct 656 CACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGTGTCGTTCTGTTACCCT 597 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 ||||||| ||||| || || ||||| |||| || | ||||| ||||| | | |||| Sbjct 596 GATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAACACACGAATATGTTG 537 Query 282858 TTCCTAAATCAATACCAATAGC 282879 | || | ||| || ||||| || Sbjct 536 TACCAAGATCGATCCCAATGGC 515 >seq6821 Length=13617 Score = 172 bits (190), Expect = 4e-37 Identities = 384/571 (67%), Gaps = 18/571 (3%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || ||||| || | |||||| || || | |||| |||| |||| | ||||| ||| Sbjct 9391 GTACCACCTCCAAGATCAAATATCAGAATATTCTTTTCACCATCTT---TCTTATCTAGA 9447 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || ||||||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 9448 CCGTACGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 9507 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || |||||||| || || || | |||| ||||||||||| || || ||||| Sbjct 9508 ATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAGGCTGGGACAGTG 9567 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | || |||| || || | ||| |||| ||| | || | |||||| || | | Sbjct 9568 ACTACTGCATGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 9627 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT-----ATG 282578 || | ||| | || || | ||||| | | | |||| ||| |||| || Sbjct 9628 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 9683 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | ||||| | ||||||||| || ||||| ||| ||| || ||| | || | Sbjct 9684 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGAGTTATGT 9742 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 | ||| ||| || |||| || | || ||||| | || || | || ||||| | Sbjct 9743 CATTTTGTACAGTTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 9802 Query 282699 TATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 282757 | || |||||| || |||| || | ||| || ||||| ||||| || | || | Sbjct 9803 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAGTCGCTCGTTT 9861 Query 282758 TC---TGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 282814 || || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 9862 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 9921 Query 282815 TCAACTTTACCATTTTGCCATACACCTACAC 282845 |||||| || ||| ||||||| |||| Sbjct 9922 TCAACTCGGCCTCCTTGAAATACACCAACAC 9952 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 9443 CTAGACCGTACGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 9502 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| | ||| ||| ||||| || | ||||||||| |||||||| ||||| | Sbjct 9503 CAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAGGCTGGGA 9562 Query 86234 CAGTAATAACTGC 86246 |||| | ||||| Sbjct 9563 CAGTGACTACTGC 9575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737677780151640