Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2601 168 1e-36 seq2618 156 8e-33 seq18582 100 6e-16 seq47071 86.0 1e-11 >seq2601 Length=24241 Score = 168 bits (186), Expect = 1e-36 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||||||||| || || || ||||| ||| | | || ||||| | || || |||||||| Sbjct 23756 TTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCAAA 23815 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 || | | |||||| || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 23816 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTCGCCTTCACATT 23875 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||||| |||||| |||| || || ||||| || |||||||| ||||||||||||||||| Sbjct 23876 CTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTTAC 23935 Query 82799 AAATATCTGCATT 82811 ||||| |||||| Sbjct 23936 GAATATTTGCATT 23948 >seq2618 Length=24172 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || ||||| |||||||||||||| || | Sbjct 20947 TACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGG 20888 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || ||||| |||||||| |||||||| ||||| | |||||| ||||| | Sbjct 20887 AAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTG 20828 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || || || || ||| || |||||| ||| || | Sbjct 20827 GGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 20768 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||| || || || || | ||||| || || |||||||| Sbjct 20767 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 20719 >seq18582 Length=5012 Score = 100 bits (110), Expect = 6e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| ||||| || || ||||| ||||| || ||| | ||||| ||||||||||| ||||| Sbjct 1 TTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGT 60 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||||||||||||||| Sbjct 61 TTTACCAGTCAATGTCTTTACAAATATCTGCAT 93 >seq47071 Length=826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || ||||| |||||| |||| || || ||||| || |||||||| ||||||||||||||| Sbjct 826 TTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAACGTCTTT 767 Query 82797 ACAAATATCTGCATT 82811 || ||||| |||||| Sbjct 766 ACGAATATTTGCATT 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981070659187460