Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2518 107 5e-18 seq1099 93.3 1e-13 >seq2518 Length=24636 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||| | || |||||||||||||||||| |||| || ||||| || Sbjct 11061 TTCAATCGTCAACCAACGCTTCATAAAATGTCTATGATGTGTCATCGTGTTAAAGTCTTG 11002 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| |||||| || || | | | ||||||||||| ||||| ||| Sbjct 11001 CCTTGGTCTACGTTTCGTTTAAATCTATCTGTTACTTCACCTTATAATGCTGATTTCGAT 10942 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||| | ||| | || ||||| Sbjct 10941 GGCGATGAAATGAACTTACATCTCCCACAATC 10910 >seq1099 Length=35587 Score = 93.3 bits (102), Expect = 1e-13 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| ||||||||||| ||||||| || | Sbjct 7290 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGTGCAGAAAATAAGGTTA 7232 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||| | |||| | || |||||| ||||||||||||| |||| ||| || || Sbjct 7231 CTAACTGACGACGACAGAAAAATTCAAAACCATCTTCAACTACTTGATGCGCTCG 7177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185898308814540