Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2601 96.9 8e-15 seq2618 89.7 1e-12 seq41977 84.2 5e-11 >seq2601 Length=24241 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | |||||||| ||||| || ||||| || || | ||| || | || Sbjct 23932 AAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGTGATACTATTGAGAAT 23873 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| || ||| ||| | | || || Sbjct 23872 GTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTT 23813 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || |||||||||||||||||| | ||| || | || |||||| |||||||||| Sbjct 23812 GCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGA 23757 >seq2618 Length=24172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || |||||||| || || | ||||| || | |||| ||| | ||| || Sbjct 20734 AAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGATACAATAGAAGCA 20793 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || || ||| ||| | || || || Sbjct 20794 GTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAACGTCTAATTTTT 20853 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | |||| || || | ||||| || || Sbjct 20854 GCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATACAGAAGGAATCA 20913 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 20914 ACACTTCATCTTGT 20927 >seq41977 Length=1080 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || |||||| || | || ||||||||||||| || ||||||| || ||| Sbjct 105 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 46 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||| || ||||| || | |||||||| Sbjct 45 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180910155368940