Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4373 174 2e-38 seq5303 107 3e-18 >seq4373 Length=18302 Score = 174 bits (192), Expect = 2e-38 Identities = 353/516 (68%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 || ||||| | |||||| ||||| ||||| || ||||||||||| || | | Sbjct 10772 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10713 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 ||||||||||| || | || |||||| | ||| || || |||||| ||||||| || Sbjct 10712 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACTGCCTCTCTTATTATTGAC 10653 Query 39569 GTTACTACCTCATCACTCGGTGGATGCA--ATAA-ATGTTTAAACATTAAGCAGGCGAAG 39625 || || | || ||| || | |||| ||||||||| | || || ||||| Sbjct 10652 TCAAC-ACGT--TCTTTCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAA 10596 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 |||||||| || || || |||||||| |||||||| || ||| | ||||||||||| Sbjct 10595 TCACAATGAAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 10536 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||| || || || ||||| ||||| || || || |||||||| || | ||||| Sbjct 10535 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCC 10476 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTC 39802 ||||||||||| |||| | | ||| | || | | | || | ||||| | Sbjct 10475 ACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCT 10416 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAAGAGATA 39861 |||||| | ||| || || ||||||| | ||| | ||| || || |||||| | Sbjct 10415 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAA 10357 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||| | ||||| | |||||||| ||||| | | |||||||| || || Sbjct 10356 GTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTG 10297 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || || ||||| || ||||| | ||| ||||| || Sbjct 10296 AATATTCTCAATAGCTATCTGCATTCCATAAAAGCA 10261 >seq5303 Length=16207 Score = 107 bits (118), Expect = 3e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 || |||||| |||| ||||||||||||| || || | || ||| || ||| Sbjct 6846 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 6905 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || | || || || || || || ||||||| || | ||||| |||||| ||||| Sbjct 6906 AACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTC 6965 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || ||||| ||||| ||| |||| | | ||||||||| || || | || | Sbjct 6966 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGG 7025 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043 | |||||| || ||||| | ||| || || || || || |||||||||||||| | Sbjct 7026 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACAT 7085 Query 70044 CAGATTGTATGT 70055 ||| || || || Sbjct 7086 CAGGTTATACGT 7097 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || || || || ||| |||||| ||||||| || ||||| Sbjct 5438 TACATTGTTTCAAATATACGTTTGTTAAGGTCTGCCGCTTCTGGACTATCAAAGGGATAC 5497 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| ||||| ||||||||| || ||||||||||||||||| || | ||| | | Sbjct 5498 CTCAAAAGACAAAATGTATCTGCCAAACCTTGAACCCCAATACCGATCGGCCGATGACGC 5557 Query 69136 TTATTTGAACT 69146 ||||||| || Sbjct 5558 ATATTTGATCT 5568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686392416309600