Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4373 165 6e-36 seq1461 149 5e-31 seq9656 89.7 4e-13 >seq4373 Length=18302 Score = 165 bits (182), Expect = 6e-36 Identities = 598/932 (64%), Gaps = 54/932 (6%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || ||||||| || | ||||| | || || || || || Sbjct 10021 TTCGTCCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCT 10080 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || |||||| | ||||| | ||||||| | | Sbjct 10081 TCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACATTGGGAGTCGCTC 10140 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| ||||| ||||| | || || || || ||||| ||||| ||||| Sbjct 10141 AAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGACGGA 10200 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAG-AAGTTCAATTACCAGAAGCACG 43938 || || || || | |||| | || || || |||| || | ||||| | || Sbjct 10201 ATTGTACTCGAGAACCTC-TTAGAACGCTTCAGCCAGGAAGTCCAGATCCCAGAGGTTCG 10259 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || |||||||| | || || || || || |||||||| || ||||||||| | | | Sbjct 10260 TTGCTTTTATGGAATGCAGATAGCTATTGAGAATATTCACTCTGAAATGTACTCTTTATT 10319 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAA 44057 || ||||| ||||||||||| | || | | | | || || || ||| | || Sbjct 10320 AATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAA 10379 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114 | || || | | || | || || | ||||| | | ||||| | |||| || Sbjct 10380 CTTAACTTGTGTTGCAAAA-AAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAAT 10438 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | |||||| |||||| | | || ||||||| |||||||| |||| ||||| || Sbjct 10439 CTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTTTTTTCTGGTA 10498 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 || || || ||||| ||| | |||||||||||| | |||||||| || | ||| | Sbjct 10499 GCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCA 10558 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 |||| ||||| ||| | || ||||| | ||||| ||||| ||||| | ||| || | Sbjct 10559 ATGAATTAATCAGTAGAGACGAAGGACTTCATTGTGATTTCGCTTGTCTATTATTTAAAC 10618 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAG-ACAATTACAG-ATATTGTTGTAGAGGCAGT 44352 || | | | |||||||| | ||| || | || || | ||||||||| Sbjct 10619 ATAT---TATCAAAAAGCCTTC--GAAAGAACGTGTTGAGTCAATAATAAGAGAGGCAGT 10673 Query 44353 AAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT-- 44410 |||||||| || ||| | || ||| |||| || | ||||| ||||||||| Sbjct 10674 TCTAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTG 10733 Query 44411 -GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGG 44469 ||| ||||| || || ||||||| || ||||| | |||| | ||||| || Sbjct 10734 CAAAC---TGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGG 10790 Query 44470 TTGCGATAA-------ACACTATATTGTA---------------------------CAAA 44495 || || || | | | | || || | | Sbjct 10791 TTATGAAAAGGTTTGTAAATTTTCTTTTAATCGTTTTCGTTTAGATGTATCATTCTGACA 10850 Query 44496 ACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAAC 44555 | || ||||| |||||||||||||| ||| | ||||| || |||||||||||||| || | Sbjct 10851 ATCCTTTTGACTTTATGGAAAATATATCGATCGAAGGAAAGACAAACTTTTTTGAGAAGC 10910 Query 44556 GCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | ||||| |||||||| || || |||||| Sbjct 10911 GAGTTGGTGAATATCAACGTGCTGGTGTCATG 10942 >seq1461 Length=31408 Score = 149 bits (164), Expect = 5e-31 Identities = 190/258 (74%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||||| || |||| || || ||||| ||| ||| |||||| |||| || Sbjct 10823 AAACATGTCCGTGGTATTCTGCTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCA 10764 Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | |||| || ||||| |||||||| |||||||| Sbjct 10763 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 10707 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||||||||| ||| |||| |||| ||| | || ||||| ||||| ||| Sbjct 10706 ATATTAGATAAATATGTCGGTGAATCTGAAGCGAATATCCGTAAATTGTTCGCTGATGCT 10647 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||| ||||||| | ||| |||||| | | ||||| ||||| ||| | ||||| Sbjct 10646 GAAGAAGAAGAAAAACGCAT-GGGTGCAAAATCTGCATTGCATATTATTATATTTGATGA 10588 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || || || ||||| Sbjct 10587 AATTGATGCCATTTGTAA 10570 >seq9656 Length=10280 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || || ||||| || || || ||||||||| | | || ||||||||||| || Sbjct 289 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 348 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 |||| ||||||||||||||| || |||||||| | || |||| |||||||| Sbjct 349 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397164682140700