Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2618 107 2e-18 seq2601 87.8 2e-12 seq11542 82.4 7e-11 >seq2618 Length=24172 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || |||| || || ||||| || || | Sbjct 20719 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 20778 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 20779 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 20838 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || ||||||||| ||||||| | || ||||||| || || Sbjct 20839 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 20898 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || ||||| || || | ||| | || | ||| | || ||||| |||| Sbjct 20899 ATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTATAA 20950 >seq2601 Length=24241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||| || |||| || ||| | ||||| | || || || || Sbjct 23947 ATGCAAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 23888 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||||||||||||||| || || || || ||| Sbjct 23887 GATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 23828 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| || || || || |||||||| | || | || || |||||| Sbjct 23827 CAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 23768 Query 27168 ATTCAAAAGGA 27178 || || || || Sbjct 23767 ATCCAGAAAGA 23757 >seq11542 Length=8690 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/181 (71%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 ||||| || |||||||| || | || | ||||| ||||| | ||| ||||| | Sbjct 7431 TGGAATGCAGCACAACGTCAATTAGTGCTCAAGGGCAAGATGCATTGGTTTCTGCGCCAG 7372 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCG-CTA--CAACAC 135592 || ||||| ||||||||| | ||||||| ||| | | |||| || ||| ||| Sbjct 7371 TACTGGGCCAAAAAGATACTTGAATGGTGCGCAGAGGGTCCAGAATCGGCTATTCAAATA 7312 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||||| || || ||| |||||||||||||| || ||||||| ||||| ||| Sbjct 7311 GCAATATACTTAAACGATCGTTACAGTTTAGATGGGACAGACCCAAATGGATACGTTGGT 7252 Query 135653 T 135653 | Sbjct 7251 T 7251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434591450092800