Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4373 226 4e-54 seq5303 107 3e-18 >seq4373 Length=18302 Score = 226 bits (250), Expect = 4e-54 Identities = 593/906 (65%), Gaps = 49/906 (5%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||||||||| || || ||||| ||||| || || || ||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 47912 CATAAAATCAAATGGATTAACTGCATTATA--------------------------AAtt 47945 |||||| ||||| ||||| | | || ||| |||| Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 47946 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATC 47997 | ||| | | || | ||| | || || ||||| | ||||| || || Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 47998 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACT 48057 ||||| || ||||||||||| || | | ||||||||||| || | | ||||| Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 48058 CTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCA----CTTGG 48112 | ||||| || || || || |||||| || || |||| || ||| Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTTTT 10628 Query 48113 TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCT 48172 || ||| | ||||||||| | || ||| || |||||||||||||| ||||| ||||| Sbjct 10627 TG-ATA----ATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCT 10573 Query 48173 ACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAA 48232 ||| |||||||| || ||| | || || ||||| || || ||||| || ||||| || Sbjct 10572 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 10513 Query 48233 TATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCT 48292 ||| || ||||| |||||||| || | ||||| || || ||||| || | | | Sbjct 10512 TATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACG 10453 Query 48293 CTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTT 48349 ||| | || | | || | | | ||||| | |||||| | |||||| || Sbjct 10452 TTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 10393 Query 48350 TACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAA 48408 ||||||| | ||| | ||| || || |||||||||| |||| ||| ||||| | Sbjct 10392 AACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGA 10334 Query 48409 CGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468 ||| ||||| ||||| | | |||||||| ||||||||||| ||||| || ||||| | Sbjct 10333 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCA 10274 Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528 ||| ||||| || | | |||| |||||| || ||| | || ||||| | | Sbjct 10273 TTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGT 10214 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588 |||| ||| ||||| ||||| || ||||| || ||||| || | || |||| Sbjct 10213 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 10154 Query 48589 TTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 48648 ||| | || | ||| | ||| |||||| || | ||| || ||||| Sbjct 10153 GTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 10094 Query 48649 CTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 | |||||||| || || | || || ||||| | || ||| | ||| |||| || | Sbjct 10093 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 10034 Query 48709 GGAAAA 48714 |||||| Sbjct 10033 GGAAAA 10028 >seq5303 Length=16207 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 || ||| || ||| |||||||||||||| || || | ||| ||| || ||| Sbjct 6846 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 6905 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 || ||| || || || || || | |||||||| | || || |||||| || || Sbjct 6906 AACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTC 6965 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 ||| || || |||||||| || || |||| | | ||||||||| || || | || | Sbjct 6966 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGG 7025 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | |||||| || ||||| | |||||| || ||||| ||||||||||||||||| Sbjct 7026 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 7082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694146582729600