Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4373 196 7e-45 seq5303 102 1e-16 >seq4373 Length=18302 Score = 196 bits (216), Expect = 7e-45 Identities = 585/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Minus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || ||||| ||||| || || || ||||| | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 46401 CATAAAATCAAACGGATT----------------------------------AGTAACAT 46426 |||||| ||||| ||||| || || | Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 46427 TATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 || ||| |||| | | || | ||| | || || ||||| | ||||| || ||| Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 ||||| || ||||||||||| || | |||| |||||||| || | | ||||| Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 | ||||| || || || || |||||| || || ||| | || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTTTCGAAGGCTTTT 10628 Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666 || | ||||||||| | || ||| || |||||||||||||| ||||| |||||||| | Sbjct 10627 TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTACTGA 10568 Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 ||||||| || ||| | || |||||||| || || || || || ||||| ||||||| Sbjct 10567 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 10508 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | ||||| |||||||| || | ||||| || || || || || | | | ||| Sbjct 10507 CTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTG 10448 Query 46787 CGTAACTGGCATCATTATGAA--TCCA--CC--TTTGA-GCCCAATCAGCCTTTTTCTTT 46839 | || | | ||| ||| |||| || | | | ||||| | ||||||||| Sbjct 10447 CAAAAGTAG----ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 10392 Query 46840 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAAC 46898 ||||||| | ||| | ||| || || |||||||||| |||| | ||||| | Sbjct 10391 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 10333 Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 |||||||| ||||| | | |||||||| || ||||| || |||||||| ||||| | Sbjct 10332 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGCAT 10273 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATT 47018 ||| ||||| || | | || | ||||| || || | || ||||| | | || Sbjct 10272 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAAGAGGTT 10213 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||| || ||||| ||||| || ||||| || || || || | || |||| Sbjct 10212 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 10153 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138 ||| | | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 10152 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 10093 Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 ||||| || || || | || || ||||| | || ||| | ||| |||||| || || Sbjct 10092 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 10033 Query 47199 AAAAA 47203 |||| Sbjct 10032 GAAAA 10028 >seq5303 Length=16207 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 ||||||||||||| || || | ||| || || ||| || | || || || Sbjct 6862 CCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATTCCAATA 6921 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || ||||||| || | ||||| |||||| ||||| || ||||| |||||| Sbjct 6922 CCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTGTCGTAAATGCCTTCTATA 6981 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 ||||| || |||| | | ||||||||| || || | || | | |||||| || Sbjct 6982 CTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTTCCAGCG 7041 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 ||||| | ||| || || ||||| || |||||||||||||| Sbjct 7042 TTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 7082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712398451564800