Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4373 223 4e-53 >seq4373 Length=18302 Score = 223 bits (246), Expect = 4e-53 Identities = 605/919 (66%), Gaps = 58/919 (6%) Strand=Plus/Minus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||||||||| ||||| || | || ||||| |||||||| || || | ||||||||||| Sbjct 10927 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 10868 Query 23280 CATAAAATCAAATGGATT---AGAAGTAT---TATATAC----------------AGCTT 23317 |||||| ||||| ||||| |||| || | || || | || Sbjct 10867 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 10808 Query 23318 TACA-------TGATAA-----TTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATT 23365 |||| | |||| ||| || ||||| ||||| | ||||||||| || | Sbjct 10807 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10748 Query 23366 GACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATA 23425 ||||||||| | | || || || |||| | ||||| | || || |||| || Sbjct 10747 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10688 Query 23426 GTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGAT 23485 | ||| || ||| || ||| | |||||| ||| | ||||| | | || | Sbjct 10687 CCTGTTCTATTAGAACTGCCTCTCTTATTATTGACTCAACACGTTCTT---TCGAAGGCT 10631 Query 23486 ATTTTA-AATAC--TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTAC 23542 ||| | |||| ||||| |||| ||| || ||||||||||| || ||||| || |||| Sbjct 10630 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGAAGTCCTTCGTCTCTAC 10571 Query 23543 TAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATA 23602 | || |||||||| ||| | | ||| ||||| | |||||||| |||| ||| |||| Sbjct 10570 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 10511 Query 23603 TTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTG 23662 | || || || || ||||| |||| ||| || || || ||||| || | | |||| Sbjct 10510 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 10451 Query 23663 TACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA 23722 |||| || | || |||| |||||| | | || ||| | |||||| |||| Sbjct 10450 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTT---TTTTG 10394 Query 23723 CACACTCAATT---GTTTC-AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTT 23778 || || ||| | ||| | || || || |||||||| |||||| ||| | Sbjct 10393 CA-ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG 10335 Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||||| |||| ||||||||||| |||||||| |||||||| ||||| Sbjct 10334 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCAATAGCTATCTGC 10275 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAA- 23897 | |||||||| || | | | || | | || || || | || | || |||| Sbjct 10274 ATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTT---CTAAG 10218 Query 23898 --ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAA 23955 || ||| ||||| || ||||| || ||||||||||| | || || ||| ||| Sbjct 10217 AGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA 10158 Query 23956 TGTCTTTCATCA--GTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTT 24013 || | ||| || ||| | | ||||| | | |||||| || ||||| || | Sbjct 10157 TGACGTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCT 10100 Query 24014 CATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTT 24073 | || || ||||||||| || | || |||||| | |||| | ||| | || || Sbjct 10099 CTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATT 10040 Query 24074 GTATTGGAAATATTACGAA 24092 ||| || || | ||||| Sbjct 10039 CTATGGGGAAAAGGACGAA 10021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521095971396000