Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2618 132 1e-25 seq2601 111 4e-19 >seq2618 Length=24172 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || |||||||| || ||||| || || || | || Sbjct 20722 CAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGAT 20781 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || |||||||| ||||| || ||||| ||| Sbjct 20782 ACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAA 20841 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| || ||||||||| | |||||| |||| ||||| | Sbjct 20842 CGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATA 20901 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||||||||| |||||||| Sbjct 20902 CAGAAGGAATCAACACTTCATCTTGT 20927 >seq2601 Length=24241 Score = 111 bits (122), Expect = 4e-19 Identities = 146/200 (73%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || || | |||||||| ||||| || | ||||| || Sbjct 23950 AAAATGC---AAATATTCGTAAAGACGTTGACAGGAAAGACGATTACGTTGGAGGTTGA- 23895 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || | || || ||||| || || |||||||| ||||||||||| || |||| Sbjct 23894 -GCCTAGTGATACTATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGTATTCCTC 23836 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | ||||| ||||| | || || || || || ||| | ||||||||| | ||||| | | Sbjct 23835 CTGACCAACAACGTTTGATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTG 23776 Query 178093 ATTATAACGTCCAAAAAGAA 178112 | || ||| |||| |||||| Sbjct 23775 ACTACAACATCCAGAAAGAA 23756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202803672447160