Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1010 282 4e-71 >seq1010 Length=92424 Score = 282 bits (312), Expect = 4e-71 Identities = 517/753 (69%), Gaps = 6/753 (1%) Strand=Plus/Plus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || ||||| | |||||| || || |||||||| | | |||||| ||||| || | | Sbjct 82102 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 82161 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || ||||||| || |||||| | ||||||||| | |||||| ||| | || || Sbjct 82162 ACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGAACCGCCTCTCTTATTATTGAC 82221 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | ||| ||| || || | | | | | |||||||| | |||||| ||||| || Sbjct 82222 TCGACACGTTCTTCCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCA 82281 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||||||||||||||||| ||||| | ||| ||| ||||| | || ||||| Sbjct 82282 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 82341 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | ||||||||| || || || || ||||| || | ||| || || Sbjct 82342 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACT 82401 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| ||||| ||||| || | |||| | || | |||||| | | Sbjct 82402 GCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAAT 82461 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC-TATGGCCTT--AAACAATTTC 16450 |||| | || |||| | | |||| | ||| | |||||| || | | || || Sbjct 82462 GCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTC 82520 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 |||| | || || | || || |||||||| | |||| ||||||||| ||||| Sbjct 82521 CCTTTCTTTGGA--GTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 82578 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || ||||| || |||||||| | |||||| ||||| ||| |||| | || || |||||| Sbjct 82579 ATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCC 82638 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 | || ||||| |||||||| || || |||||||| || ||||| || || Sbjct 82639 TGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCT 82698 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 || | || ||||||| ||| || | || | ||||| | | | |||| Sbjct 82699 AACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCT 82758 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750 ||||| | |||||| ||||| |||||||| ||| || ||||| ||||| | | | Sbjct 82759 TTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGC 82818 Query 16751 CAAATATCATTGTATTGTATGGGAAATACGACG 16783 || | ||| | |||| |||||| || | |||| Sbjct 82819 CAGACATCGTGATATTCTATGGGGAAAAGGACG 82851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511223680784880