Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1010 246 4e-60 seq7458 113 5e-20 >seq1010 Length=92424 Score = 246 bits (272), Expect = 4e-60 Identities = 511/751 (68%), Gaps = 15/751 (2%) Strand=Plus/Plus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || ||||||| ||| || || || ||||| || ||||||||||| || | | Sbjct 82102 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 82161 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085 ||||| ||||| | | | ||| |||||||| || ||| ||||| ||| |||| || || Sbjct 82162 ACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGA 82220 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 24142 || |||||| || || | |||| ||||||||| | | ||| ||||| Sbjct 82221 CTCGACACGTTCTTC---CGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAA 82277 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 82278 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 82337 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || || || || |||||||| ||||| | || || |||||||| |||| ||||| Sbjct 82338 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTC 82397 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTT 24319 ||||| ||||| ||||| | | |||| || || | || || | ||||| | Sbjct 82398 CACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATC 82457 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGA 24377 | ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 82458 TAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGA 82515 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 ||| |||| || ||||| | ||||||||||| || | | |||||||| || Sbjct 82516 AAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 82575 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || || || || || || | ||| || || || | | |||| | ||||| ||| Sbjct 82576 TGAATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACT 82635 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || | || |||||| | || || || ||||||||||| || ||||| || Sbjct 82636 TCCTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAA 82695 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || || || | ||| |||| ||| | | || | ||||| ||| | Sbjct 82696 GCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGA 82755 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 ||||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | | Sbjct 82756 TCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAA 82815 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAA 24708 | ||||| || ||||||| || || |||| Sbjct 82816 TGCCAGACATCGTGATATTCTATGGGGAAAA 82846 >seq7458 Length=1001 Score = 113 bits (124), Expect = 5e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 54425 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 178 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 179 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 238 Query 54486 ACGTCTCGATAGCTG 54500 |||||| || || || Sbjct 239 ACGTCTAGAAAGTTG 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593500186372320