Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1010 116 4e-21 >seq1010 Length=92424 Score = 116 bits (128), Expect = 4e-21 Identities = 386/598 (65%), Gaps = 2/598 (0%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| ||||| ||||||||||| |||| | || | |||| | || || Sbjct 82865 AACCCACACCGTTTCGTCCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAG 82806 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | || || || ||||| || || |||||||| ||||||| || | | Sbjct 82805 AAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACAT 82746 Query 116714 TGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||||| ||| | || | || || |||||||| ||||| | || || || || Sbjct 82745 TGGGAGTCGC-TCAAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGC 82687 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || || ||||| || || |||||| || | || || ||| ||||| || ||| | Sbjct 82686 GGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAGGAAGTCCAGAT 82627 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||| || ||||| || || | ||||| || || ||||| | ||||| ||||| Sbjct 82626 CCCAGAGGTTCGTTGCTTTTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAAT 82567 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAA 116952 ||| || | || || || ||| | || | || | | | | | || || Sbjct 82566 GTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAA 82507 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 |||||| | | | || || | | ||||| ||||||| | ||||| | Sbjct 82506 CGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGCATTAGATTGGATTGG 82447 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | | | || | || || | | || || || || || || || || || Sbjct 82446 AGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTT 82387 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||||| || || ||||| || ||||| ||||| |||||||| || || ||||| || || Sbjct 82386 TTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACT 82327 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | |||| ||||| || | ||| || ||||| || || ||||| || || || ||| Sbjct 82326 GTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGT 82269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515027061879840