Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq523 134 2e-26 seq1104 127 3e-24 seq26094 107 3e-18 seq2294 96.9 5e-15 seq61 93.3 6e-14 seq165 87.8 3e-12 >seq523 Length=224339 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || || ||||||||||| |||| |||| | | Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 124599 GATACAATTTCTA-ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| | |||| | ||||||||||||||||||||| || ||||| || || Sbjct 140194 GATACAATAGAAGCAGTTAAGGC-GAAAATTCAAGATAAAGAAGGCATCCCACCAGACCA 140136 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || |||||||| || |||||| | || ||| | ||||| | || ||||| Sbjct 140135 ACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAA 140076 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | ||| | || | ||| | || |||||||| Sbjct 140075 TATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTAT 140025 >seq1104 Length=79538 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || | ||| | | | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||||||||| || ||||| |||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || ||| |||| ||||| ||||| ||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62130 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 62131 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 62180 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || | ||| | | | Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||||||||| || ||||| |||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || ||| |||| ||||| ||||| ||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61674 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 61675 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 61724 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || | ||| | | | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||||||||| || ||||| |||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || ||| |||| ||||| ||||| ||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61902 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 61903 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 61952 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || | ||| | | | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||||||||| || ||||| |||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || ||| |||| ||||| ||||| ||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62358 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||| || ||| | || ||||| || ||| | || || ||| Sbjct 62359 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGAGGT 62406 >seq26094 Length=224 Score = 107 bits (118), Expect = 3e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || | ||| | | | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||||||||| || ||||| || || Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 120 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || ||| |||| ||||| ||||| ||| Sbjct 121 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 180 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGG 124762 || || ||||| || ||| | || ||||| || ||| | || || Sbjct 181 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGG 224 >seq2294 Length=11734 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | | || || || || | ||||| |||| | | Sbjct 1341 AATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAG 1400 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||||||||| ||||||||||| || ||||| || Sbjct 1401 TGATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1460 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 1461 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 1520 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| || ||| | ||| | || |||| || || || Sbjct 1521 CATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGCAT 1571 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 124584 GAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGT 124643 ||| |||| | | |||||| ||| ||| | ||| ||||||||||| ||||||||| Sbjct 1159 GAGGTTGAGCCTAGTGATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGT 1218 Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || || ||||| |||||| | | || || || || || || || || ||| | || || Sbjct 1219 ATTCCTCCTGACCAACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACT 1278 Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 | || || || || || ||||| || ||| ||||| | || | ||| |||| ||| Sbjct 1279 CTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGT 1338 Query 124764 GGTAT 124768 || || Sbjct 1339 GGAAT 1343 >seq61 Length=705396 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 202759 AACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGG 202818 |||| |||||| ||| |||||||| ||| |||||||||| ||||||||||| || || Sbjct 258274 AACAGAAAATTTCCGTAAACATCCTTTATAGTTCATATATCTTATTTTACCAAAAATAGG 258215 Query 202819 TCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATA 202864 || ||| ||| || |||||||| |||||| |||| ||||||| Sbjct 258214 TCGTTCAGGCCAGCCTTGATCATGAACACCACATATTGCCCACATA 258169 >seq165 Length=488026 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 205392 ATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATG 205451 ||| ||||| |||| ||||| | |||| || ||| ||||||||| ||| | ||| Sbjct 487673 ATAAATATGCGCATCGCCAATTGTGTGAACGAACTCACCAGGTTTTAAACCAGTAATATG 487732 Query 205452 TGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| || |||||| |||||| |||| ||| || |||||||| | |||| Sbjct 487733 AGCAATCATATATGTTAATAAAGCATAACTTGCAATATTGAACGGTACACCAAGACCC 487790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755174271571200