Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq523 86.0 9e-12 seq68 84.2 3e-11 >seq523 Length=224339 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || ||||| || ||||||||| || |||||||||| | ||| || | |||||| ||| Sbjct 140058 GTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCA 140117 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| | | ||| || || || || || |||||||||||||| Sbjct 140118 GCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTG 140164 >seq68 Length=674937 Score = 84.2 bits (92), Expect = 3e-11 Identities = 248/379 (65%), Gaps = 16/379 (4%) Strand=Plus/Minus Query 111867 TAGGTTATTGTCCACAAAATAATATAAATTTTACAGATTTTACTGTAAAAGAAAATATAN 111926 ||||||||||||||||| |||||||| ||| |||| || || | ||| ||||| Sbjct 236224 TAGGTTATTGTCCACAACATAATATATTATTTGATTATTTCACAGTTATTGAACATATAA 236165 Query 111927 NNTTATTTAATATATTGAGAGGATTAAGTTCGTTACAATCaaaaataaaaacaaatgaaa 111986 || | | || ||| | ||| || | | |||| || ||| ||| | | | Sbjct 236164 AATTTTATGCTAAATTAAAAGGTTTTAATAATGAACAAATGAATATAGAAATACAATATT 236105 Query 111987 taattat-ttatctaaaattacatgatatagaaaattgtataataACAGAATTATCTGAA 112045 | |||| |||| |||| ||| || ||| | |||| | | ||| | | ||||||| Sbjct 236104 TTATTAAATTAT-TAAATTTAAATAATAAATTAAATGATCAAGTAAAATACTTATCTGGT 236046 Query 112046 TGTTCAAAACGTAAATTACAATTAGCTTTTTCGTTAATAGATGATTCTGATTTTATATTA 112105 | ||||||||||||| ||||| | | || || | | |||| |||||||| Sbjct 236045 GGACAAAAACGTAAATTATCTATAGCTATAGCATTTATTGGTCATTCATCAATTATATTA 235986 Query 112106 ATCGATGAACCCACACATAATATAGATTTAAAAAGTAAACAAGA--AATATGGGATTTAA 112163 | |||||||| || | ||| ||| | | | | ||| ||||||||||||| Sbjct 235985 TTAGATGAACCAACTACTGGTATTGATCCATAT--TCACGTAGATCAATATGGGATTTA- 235929 Query 112164 TATCATTATTAAAAAG-----AAATAAAACTATATTAATTACTACACATTGTATAGATGA 112218 |||||||||| | ||||||||| || | || || |||||| ||| ||||| Sbjct 235928 ----ATTATTAAAATGAAATTAAATAAAACAATTATTATAACAACACATCATATGGATGA 235873 Query 112219 AGTTGAATTATTAGCTGAT 112237 || || | |||| |||| Sbjct 235872 AGCAGATATTTTAGGTGAT 235854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743249120417280