Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1010 275 6e-69 >seq1010 Length=92424 Score = 275 bits (304), Expect = 6e-69 Identities = 588/875 (67%), Gaps = 54/875 (6%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| ||||| || ||||| |||||||| | || |||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT-------------------------ATT 16040 |||||| ||||||||||| | ||| ||| ||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 16041 TA-------TCGCATC-CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACT 16091 || | ||| |||| | |||| | || || || || | |||||| || |||| Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | ||| | | || |||||||| ||||| | || || | ||||||| |||||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT 16211 || |||||| |||||| || | ||||| | || | |||| | | || ||| | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACT--CGACACGTTCTTCCGAAGGCT 82243 Query 16212 TTA--ATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 || |||| |||||||| | || |||||| ||||||||||| | ||||||||| |||| Sbjct 82244 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 82303 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 | ||||| || || ||| | || || ||||| || |||||||| |||| ||| |||| Sbjct 82304 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 82363 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 |||| || || ||||||||| || | |||||| ||||| ||||| |||| || || | Sbjct 82364 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 82423 Query 16389 CACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgtttA 16447 | | | | | |||| | | | | ||||| | | ||||| | || |||| | | Sbjct 82424 CTGCAAAAG-TAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 16448 ACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATA 16507 ||||| | | ||| ||| || || || | | | | |||||||| ||| || Sbjct 82483 ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 82542 Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 || ||||| |||| |||| |||||||| || ||||||||||| || |||||||| | Sbjct 82543 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATT 82602 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTT 16627 ||||||||||| | | | || | || || ||||| | || | |||| | ||| Sbjct 82603 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTTC 82662 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttt 16687 ||| || ||||| || || || ||||| || || | | || || ||| | Sbjct 82663 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA----TG 82718 Query 16688 tCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTCT 16741 ||| || || || | | | || || | |||||| || ||||| |||||| Sbjct 82719 ACGT--TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 82776 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || ||||||||||||||||| |||||||| ||||| Sbjct 82777 TCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 82811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462339517712400