Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1010 203 3e-47 >seq1010 Length=92424 Score = 203 bits (224), Expect = 3e-47 Identities = 463/688 (67%), Gaps = 54/688 (8%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 13975 CATAAAATCAAATGGATTTGT-----TGACA----TAAAC-------------------- 14005 |||||| ||||| ||||| || ||| | ||||| Sbjct 82007 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAAT 82065 Query 14006 ------ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059 || || ||| |||| ||||| | ||||| || || || || || ||||| || Sbjct 82066 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 82125 Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119 ||| |||| | | |||||||| || |||| | || || | | | |||||| Sbjct 82126 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 82185 Query 14120 TCTTTTTCTAT-AGACACAGCCTCGTTTATAAT--AATCGTAATAATTTCATTAGAAGGA 14176 |||| |||||| ||| || ||||| |||| || | ||| | | ||| | ||||| Sbjct 82186 TCTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCG--ACACGTTCTTCCGAAGGC 82242 Query 14177 GGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTA 14236 | | | ||||||||| | || ||| || ||||||||||| || || || |||||| Sbjct 82243 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 82302 Query 14237 CTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAAT 14296 || || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||| Sbjct 82303 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 82362 Query 14297 ATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14356 || || ||||| || ||||| || | || || ||||| ||||| || ||||| ||| Sbjct 82363 ATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 82422 Query 14357 TCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14415 ||| |||| | | ||| | || | ||||| | | ||||| | || |||||| Sbjct 82423 TCTGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGC 82481 Query 14416 AATAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTT 14470 || | || | ||| || || || || || | || || |||| ||||| ||| || Sbjct 82482 AACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTT 82538 Query 14471 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14530 | |||||||||||||| | ||| |||||||||||||| || || || ||||||||| Sbjct 82539 G--ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATC 82596 Query 14531 TGAAAACCATAAAAACATCTAGCTTCTG 14558 || | |||||||| || | | | |||| Sbjct 82597 TGCATTCCATAAAAGCAACGAACCTCTG 82624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482165721267120