Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq523 98.7 9e-16 seq26094 89.7 5e-13 >seq523 Length=224339 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || ||||| || ||| | || ||||| || | Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | ||| | || || || ||| || || |||||| | || || ||||| Sbjct 140194 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 140135 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || |||||||| || ||||||||||| ||||||| | | | ||| | ||| ||||| Sbjct 140134 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGA-TGGACGAACTCTTTCCGACTATAA 140076 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||||| || || Sbjct 140075 TATACAGAAGGAATCAACACTTCATCTTGTCCT 140043 >seq26094 Length=224 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || ||||||||||| | || || |||||| Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || || || ||||| | || ||||||||| Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 120 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| ||||||| | || || ||||| || Sbjct 121 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 180 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || |||||||| |||| Sbjct 181 ATCCAGAAAGAGTCCACTCTTCACTTGGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445600162565280